DRSC/TRiP Functional Genomics Resources

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Protein Alignment vvl and Ccdc160

DIOPT Version :10

Sequence 1:NP_001303384.1 Gene:vvl / 38752 FlyBaseID:FBgn0086680 Length:742 Species:Drosophila melanogaster
Sequence 2:XP_038956254.1 Gene:Ccdc160 / 683891 RGDID:1597791 Length:390 Species:Rattus norvegicus


Alignment Length:273 Identity:41/273 - (15%)
Similarity:86/273 - (31%) Gaps:51/273 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   326 QPKPSAQEITSLADSLQLEKEVVRVW-------FCNRRQKEKRMTPPNTLGGDMMDGMPPGHMHH 383
            :|..|.:||..:...:...:   :.|       |.|....::...||.:.........|......
  Rat    54 RPWTSGREIKQVPGKMDARR---KQWKDNTFTPFVNEHDFQEDAAPPQSFSEQPAADKPKRMGRI 115

  Fly   384 GGYHPHHDMHGSPMGTHSHS------HSPPMLS------PQNMQSSAVAAHQL-----AAHXQSE 431
            ..:...::..|:......:|      ...|.|.      .:|..::.||...|     |.. .|.
  Rat   116 SNFSMRNNQEGNKFKRKEYSSQIVEREQDPNLRERRKNVSKNEANTNVAFRDLLDSDEATKESSH 180

  Fly   432 IQESNSA-AAASTPASLNSLSQQQQQQQQQQQQQHQQQQQ--------HQQQQHTPNTPSSSAGS 487
            .:||.|| :....||:.....::..:....:.:.|...::        .:.:|...|.......|
  Rat   181 RRESASAWSKKELPAATQGTRKKWTEAMPPKLRLHLLNEELGELSLKCREIEQDFENAEKELLNS 245

  Fly   488 SATMTSQVMSPQSPLGSSSAGNQANNNNNNNNNNNSSTNN---------------NNNNNNNEEQ 537
            ....:.:.::.|.|:.:|....:.....|:.:...::..|               |..|.|.::.
  Rat   246 RKEASMKAVNFQEPIAASKKDRELQALKNDLSEKATNVKNLTEELQQAKEVMYRLNLENRNLKDA 310

  Fly   538 VKHHQQQQQQQQA 550
            |:..:.|.:...|
  Rat   311 VRKLKHQTELNTA 323

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vvlNP_001303384.1 POU 212..286 CDD:197673
Homeodomain 305..361 CDD:459649 7/41 (17%)
Ccdc160XP_038956254.1 SMC_prok_B <213..>351 CDD:274008 15/111 (14%)
Blue background indicates that the domain is not in the aligned region.

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