Protein Alignment vvl and lmx1a

DIOPT Version :9

• Sequence 1: NP_001303384.1
• Gene: vvl / 38752
• FlyBaseID: FBgn0086680
• Length: 742
• Species: Drosophila melanogaster
• Sequence 2: NP_001020669.1
• Gene: lmx1a / 558036
• ZFINID: ZDB-GENE-041014-332
• Length: 366
• Species: Danio rerio
• Alignment Length: 335
• Identity: 55/335 - (16%)
• Similarity: 91/335 - (27%)
• Gaps: 150/335 - (44%)

  Fly   283 EEADSTTGSPTSIDKIAAQGRKRKKRTSIEVSVKGALEQHFHKQPKPSAQEITSLADSLQLEKEV 347
            :|.:..|...::|.......|.::.||.:....:.|.:..|....||..:...:||....|...|
Zfish   164 DEDNLKTAGESNITGDVEHKRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRV 228

  Fly   348 VRVWFCNRRQKEKRMTPPNTLGGDMMDGMPPGHMHHGGYHPHHDMHGSPMGTHSHSHSPPMLSPQ 412
            |:|||.|:|.|.|::.
Zfish   229 VQVWFQNQRAKMKKLV------------------------------------------------- 244

  Fly   413 NMQSSAVAAHQLAAHXQSEIQESNSAAAASTPASLNSLSQQQQQQQQQQQQQHQQQQQHQQQQHT 477
                                                     ::||||:|....|::::...||||
Zfish   245 -----------------------------------------RRQQQQKQTVCPQEKRESPSQQHT 268

  Fly   478 PNTPSSSAGSSATMTSQVMSPQSPLGSSSAGNQANNNNNNNNNNNSSTNNNNNNNNNEEQVKHHQ 542
                ::|.|:            .|:....||:......|.:.::.|
Zfish   269 ----ATSCGA------------LPVELECAGSYPLPQQNLSLDSQS------------------- 298

  Fly   543 QQQQQQQASSIAAAAAAAMYMDPMRYQHPHHPHPHPHQHPHLNPAHHPHLFHTSDQLQHSQQQTV 607
                              :.:||.|........|..|.||:.....:...  .||.|.|     .
Zfish   299 ------------------LKLDPFRQGLTPPQMPGDHMHPYGCDTLYDET--DSDPLCH-----F 338

  Fly   608 GGTSSNSQLS 617
            |...|:|:||
Zfish   339 GDCMSSSELS 348

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
vvl	NP_001303384.1	POU	212..286	CDD:197673	1/2 (50%)
		Homeobox	307..360	CDD:278475	17/52 (33%)
lmx1a	NP_001020669.1	LIM1_Lmx1a	26..77	CDD:188756
		LIM	84..140	CDD:295319
		Homeobox	188..241	CDD:278475	17/52 (33%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	1	1.030	-	avgDist	Average_Evolutionary_Distance	R3844
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	1	1.030