DRSC/TRiP Functional Genomics Resources

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Protein Alignment vvl and pou2f3

DIOPT Version :9

Sequence 1:NP_001303384.1 Gene:vvl / 38752 FlyBaseID:FBgn0086680 Length:742 Species:Drosophila melanogaster
Sequence 2:XP_005172050.1 Gene:pou2f3 / 553427 ZFINID:ZDB-GENE-060512-299 Length:399 Species:Danio rerio


Alignment Length:429 Identity:149/429 - (34%)
Similarity:201/429 - (46%) Gaps:100/429 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    47 HAAAAAAAHHQLPSSPSPNGQGNGGGLGLGSGSGLGSWSALHPDPWMQTHHTHHLPAAAA-VASA 110
            |:.::....|....||.|.||..            |...:|||.|.:......||.:.:: :.|.
Zfish    39 HSGSSHKTCHLTQGSPLPPGQLT------------GEMPSLHPLPQLVLMPGSHLSSPSSFLLSQ 91

  Fly   111 ADTVKQEMS-----HLSQQTRIQQGMASPHAAWHA--PHAGHYAPTGGSPLQYHHAMNGMLHHPA 168
            |.:..|.:|     .||..::.|.|:. ||....|  |.|...:...||.:..|..|:       
Zfish    92 AQSGHQGLSLLPPNLLSLPSQTQTGLL-PHQPGLALTPQAMGRSGLAGSSMDGHLDMS------- 148

  Fly   169 HAVAAAHHQSVAPLHHTLRGESPQLHIHHHMGGGDRDAISGGEEDTPTS-DDLEAFAKQFKQRRI 232
                                   .|.:..|:         |..:|.|.. ::||.|||.||||||
Zfish   149 -----------------------HLQVPKHV---------GSPQDEPNDLEELEQFAKAFKQRRI 181

  Fly   233 KLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLQKWLEEA-----DSTTGSP 292
            ||||||.|||||:|.||||.||||||.|||||.|||||||||||||:|||.:|     |:.|.:.
Zfish   182 KLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLEKWLSDAENSPSDTMTNTT 246

  Fly   293 TSIDKIAAQGRKRKKRTSIEVSVKGALEQHFHKQPKPSAQEITSLADSLQLEKEVVRVWFCNRRQ 357
            |....:...|||||||||||.::|..||:.|...|||:::|||.:::.|.:||||||||||||||
Zfish   247 TLPPLMEGYGRKRKKRTSIETNIKLTLEKRFLDNPKPNSEEITLISEQLAMEKEVVRVWFCNRRQ 311

  Fly   358 KEKRMTPPNTLGGDMMDGMPPGHMHHGGYHPHHDMHGSPMGTHSHSHSPPMLSPQNMQSSAVAAH 422
            ||||:..|                          :..||:..|:.:...|        |::.:..
Zfish   312 KEKRIYCP--------------------------VSTSPIKPHNFNPRLP--------STSRSFS 342

  Fly   423 QLAAHXQSEIQESNSAAAASTPASLNSLSQQQQQQQQQQ 461
            .|.:...|......|.:..|:|.:|::.|.....|...|
Zfish   343 PLTSGGVSSSSSPGSPSRGSSPGTLSTTSSPLTAQSVNQ 381

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vvlNP_001303384.1 POU 212..286 CDD:197673 57/79 (72%)
Homeobox 307..360 CDD:278475 32/52 (62%)
pou2f3XP_005172050.1 POU 161..235 CDD:197673 56/73 (77%)
Homeobox 261..314 CDD:278475 32/52 (62%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3802
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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