DRSC/TRiP Functional Genomics Resources

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Protein Alignment vvl and pou2f3

DIOPT Version :10

Sequence 1:NP_001303384.1 Gene:vvl / 38752 FlyBaseID:FBgn0086680 Length:742 Species:Drosophila melanogaster
Sequence 2:XP_005172050.1 Gene:pou2f3 / 553427 ZFINID:ZDB-GENE-060512-299 Length:399 Species:Danio rerio


Alignment Length:429 Identity:149/429 - (34%)
Similarity:201/429 - (46%) Gaps:100/429 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    47 HAAAAAAAHHQLPSSPSPNGQGNGGGLGLGSGSGLGSWSALHPDPWMQTHHTHHLPAAAA-VASA 110
            |:.::....|....||.|.||..            |...:|||.|.:......||.:.:: :.|.
Zfish    39 HSGSSHKTCHLTQGSPLPPGQLT------------GEMPSLHPLPQLVLMPGSHLSSPSSFLLSQ 91

  Fly   111 ADTVKQEMS-----HLSQQTRIQQGMASPHAAWHA--PHAGHYAPTGGSPLQYHHAMNGMLHHPA 168
            |.:..|.:|     .||..::.|.|:. ||....|  |.|...:...||.:..|..|:       
Zfish    92 AQSGHQGLSLLPPNLLSLPSQTQTGLL-PHQPGLALTPQAMGRSGLAGSSMDGHLDMS------- 148

  Fly   169 HAVAAAHHQSVAPLHHTLRGESPQLHIHHHMGGGDRDAISGGEEDTPTS-DDLEAFAKQFKQRRI 232
                                   .|.:..|:         |..:|.|.. ::||.|||.||||||
Zfish   149 -----------------------HLQVPKHV---------GSPQDEPNDLEELEQFAKAFKQRRI 181

  Fly   233 KLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLQKWLEEA-----DSTTGSP 292
            ||||||.|||||:|.||||.||||||.|||||.|||||||||||||:|||.:|     |:.|.:.
Zfish   182 KLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLEKWLSDAENSPSDTMTNTT 246

  Fly   293 TSIDKIAAQGRKRKKRTSIEVSVKGALEQHFHKQPKPSAQEITSLADSLQLEKEVVRVWFCNRRQ 357
            |....:...|||||||||||.::|..||:.|...|||:::|||.:::.|.:||||||||||||||
Zfish   247 TLPPLMEGYGRKRKKRTSIETNIKLTLEKRFLDNPKPNSEEITLISEQLAMEKEVVRVWFCNRRQ 311

  Fly   358 KEKRMTPPNTLGGDMMDGMPPGHMHHGGYHPHHDMHGSPMGTHSHSHSPPMLSPQNMQSSAVAAH 422
            ||||:..|                          :..||:..|:.:...|        |::.:..
Zfish   312 KEKRIYCP--------------------------VSTSPIKPHNFNPRLP--------STSRSFS 342

  Fly   423 QLAAHXQSEIQESNSAAAASTPASLNSLSQQQQQQQQQQ 461
            .|.:. .|......|.:..|:|.:|::.|.....|...|
Zfish   343 PLTSGGVSSSSSPGSPSRGSSPGTLSTTSSPLTAQSVNQ 381

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vvlNP_001303384.1 POU 212..286 CDD:197673 57/79 (72%)
Homeodomain 305..361 CDD:459649 35/55 (64%)
pou2f3XP_005172050.1 POU 161..235 CDD:197673 56/73 (77%)
Homeodomain 259..315 CDD:459649 35/55 (64%)

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