DRSC/TRiP Functional Genomics Resources

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Protein Alignment vvl and Pou4f3

DIOPT Version :10

Sequence 1:NP_001303384.1 Gene:vvl / 38752 FlyBaseID:FBgn0086680 Length:742 Species:Drosophila melanogaster
Sequence 2:NP_001102359.1 Gene:Pou4f3 / 364855 RGDID:1310459 Length:338 Species:Rattus norvegicus


Alignment Length:328 Identity:126/328 - (38%)
Similarity:169/328 - (51%) Gaps:59/328 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    62 PSPNGQGNGGGLGLGSGSGLGSWSAL-----------HPDPWMQTHHTHHLPAAAAVASAADTVK 115
            |:|..|||  ..|....|.|....||           ||   .:...|:|..::....|.:.|| 
  Rat    37 PAPQLQGN--IFGSFDESLLARAEALAAVDIVSHGKNHP---FKPDATYHTMSSVPCTSTSPTV- 95

  Fly   116 QEMSHLSQQTRIQQGMASPHAAWHAPHAG-------HYAPT---GGSPLQYHHAMNGMLHHPAHA 170
             .:||.:..|      :.||   |..|.|       |.:||   .|.....|..|...: ||.|.
  Rat    96 -PISHPAALT------SHPH---HPVHQGLEGDLLEHISPTLSVSGLGAPEHSVMPAQI-HPHHL 149

  Fly   171 VAAAH-HQSVAPLH-HTLRGESPQLHIHHHMGGGDRDAISGGEEDTPTSDDLEAFAKQFKQRRIK 233
            .|..| ||::...| |.:   :|    |..|..    .:|..|.|   ..:|||||::|||||||
  Rat   150 GAMGHLHQAMGMSHPHAV---AP----HSAMPA----CLSDVESD---PRELEAFAERFKQRRIK 200

  Fly   234 LGFTQADVGLALGTL----YGNVFSQTTICRFEALQLSFKNMCKLKPLLQKWLEEADSTTGSPTS 294
            ||.||||||.||..|    .|:: ||:||||||:|.||..||..|||:||.|||||::......|
  Rat   201 LGVTQADVGAALANLKIPGVGSL-SQSTICRFESLTLSHNNMIALKPVLQAWLEEAEAAYREKNS 264

  Fly   295 IDKIAAQGRKRKKRTSIEVSVKGALEQHFHKQPKPSAQEITSLADSLQLEKEVVRVWFCNRRQKE 359
            ..::.....:::|||||....|.:||.:|..||:||:::|.::|:.|.|:|.||||||||:|||:
  Rat   265 KPELFNGSERKRKRTSIAAPEKRSLEAYFAIQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQ 329

  Fly   360 KRM 362
            |||
  Rat   330 KRM 332

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vvlNP_001303384.1 POU 212..286 CDD:197673 47/77 (61%)
Homeodomain 305..361 CDD:459649 29/55 (53%)
Pou4f3NP_001102359.1 POU-IV box. /evidence=ECO:0000250|UniProtKB:Q15319 56..65 2/8 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 91..112 8/31 (26%)
POU 179..256 CDD:197673 48/80 (60%)
Homeodomain 275..331 CDD:459649 29/55 (53%)

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