Protein Alignment vvl and pdm3

DIOPT Version :9

• Sequence 1: NP_001303384.1
• Gene: vvl / 38752
• FlyBaseID: FBgn0086680
• Length: 742
• Species: Drosophila melanogaster
• Sequence 2: NP_001188885.2
• Gene: pdm3 / 35813
• FlyBaseID: FBgn0261588
• Length: 1292
• Species: Drosophila melanogaster
• Alignment Length: 485
• Identity: 121/485 - (24%)
• Similarity: 173/485 - (35%)
• Gaps: 179/485 - (36%)

  Fly     1 MAATSYMTP---PSGDLDMALGGGGYHTSSPRSAADAGEMKYMQHHHHH---------------- 46
            :..:|.::|   |.|    .:||.|..|::        .|...|||..|
  Fly   851 LRGSSTVSPKHSPQG----RMGGSGGSTTT--------GMNLSQHHERHDRLERLERQERHERRS 903

  Fly    47 HAAAAAAAHHQLPSSPSPNGQGNGGGLGLGSGSGLGSWSALHPDPWMQTHHTHHLPAAAAVASAA 111
            |...|.|....:.||.|   .|:.|| .|.||       .|.|            |::|...|||
  Fly   904 HTPTATATRASVSSSSS---AGHHGG-SLPSG-------RLSP------------PSSAPSNSAA 945

  Fly   112 DTVKQEMSHLSQQTRIQQGMASPHAAWHAPHAGHYAPTGGSP----------------------- 153
            :::.            .:|..||....|:|. ||....||||
  Fly   946 NSIS------------DRGYTSPLFRTHSPQ-GHALSLGGSPRLERDYLGNGPSSGTATSTSSCG 997

  Fly   154 ----------------LQYHHAMNGML-------------------------HHPAHAVAAAHHQ 177
                            :...:|.||.|                         ..|..:.::..|.
  Fly   998 APTAAGSSATANVLSSINRLNASNGELTITKSLGAPTATATRASSASPRDDSPGPGPSTSSVSHM 1062

  Fly   178 SVAPLHHTLRGESPQLHIHHHMGGGDRDAISGGEEDTPTS----------------DDLEAFAKQ 226
            ....|..:.|.|.|  |:..:....|.|.:.    |:|..                |:::.|||.
  Fly  1063 QPLKLSPSSRSEPP--HLSPNGNDNDNDLLM----DSPNEPTINQATTNVVDGIDLDEIKEFAKA 1121

  Fly   227 FKQRRIKLGFTQADVGLALGTLYGNVFSQTTIC-------------------RFEALQLSFKNMC 272
            ||.||:.||.||..||.||....|..:||:.||                   .||.|.::.|:..
  Fly  1122 FKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICSSALAAQMYAAQLSTQQQNMFEKLDITPKSAQ 1186

  Fly   273 KLKPLLQKWLEEADST------TGSPTSIDKIAAQ-GRKRKKRTSIEVSVKGALEQHFHKQPKPS 330
            |:||:|::|::||:.:      :|.....|.|..: .:|||:|||........|..||.:...||
  Fly  1187 KIKPVLERWMKEAEESHWNRYKSGQNHLTDYIGVEPSKKRKRRTSFTPQALELLNAHFERNTHPS 1251

  Fly   331 AQEITSLADSLQLEKEVVRVWFCNRRQKEK 360
            ..|||.||..|..|:||:|:||||:||..|
  Fly  1252 GTEITGLAHQLGYEREVIRIWFCNKRQALK 1281

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
vvl	NP_001303384.1	POU	212..286	CDD:197673	33/108 (31%)
		Homeobox	307..360	CDD:278475	24/52 (46%)
pdm3	NP_001188885.2	Pou	1108..1200	CDD:304656	31/91 (34%)
		Homeobox	1228..1281	CDD:278475	24/52 (46%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG3802
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	P	PTHR11636
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	3	2.910