DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment vvl and pou5f3

DIOPT Version :10

Sequence 1:NP_001303384.1 Gene:vvl / 38752 FlyBaseID:FBgn0086680 Length:742 Species:Drosophila melanogaster
Sequence 2:NP_571187.1 Gene:pou5f3 / 30333 ZFINID:ZDB-GENE-980526-485 Length:472 Species:Danio rerio


Alignment Length:371 Identity:147/371 - (39%)
Similarity:182/371 - (49%) Gaps:82/371 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    95 THHTHHLPAAA-----AVASA-ADTVKQEMSHLSQQTRIQQGMAS-----------------PHA 136
            |...|..|.||     .||.| |.|....:|....:||.|..|.|                 |.:
Zfish    85 TQPKHWYPFAAPEFTGQVAGATAATQPANISPPIGETREQIKMPSEVKTEKDVEEYGNEENKPPS 149

  Fly   137 AWHAPHAGHYAPTGGSPLQYHHAMNGMLHHPAHAVAAAHHQSVAPLHHTLRGESPQLHIHHHMGG 201
            .:|........|||   :.|:...|.........:.|..:.|.||  .|....||.|.......|
Zfish   150 QYHLTAGTSSVPTG---VNYYTPWNPNFWPGLSQITAQANISQAP--PTPSASSPSLSPSPPGNG 209

  Fly   202 -GDRDAISGG----------------------------EEDTPTSDDLEAFAKQFKQRRIKLGFT 237
             |.....|||                            ||:|.|::|||.|||:.|.:||.||||
Zfish   210 FGSPGFFSGGTAQNIPSAQAQSAPRSSGSSSGGCSDSEEEETLTTEDLEQFAKELKHKRITLGFT 274

  Fly   238 QADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLQKWLEEADSTTGSPT--SIDKIAA 300
            |||||||||.|||.:|||||||||||||||||||||||||||:||.||:::.....  .|:::..
Zfish   275 QADVGLALGNLYGKMFSQTTICRFEALQLSFKNMCKLKPLLQRWLNEAENSENPQDMYKIERVFV 339

  Fly   301 QGRKRKKRTSIEVSVKGALEQHFHKQPKPSAQEITSLADSLQLEKEVVRVWFCNRRQKEKRMT-- 363
            ..||||:|||:|.:|:.|||.:|.|.|||:..|||.::|.|.||::||||||||||||.||:.  
Zfish   340 DTRKRKRRTSLEGTVRSALESYFVKCPKPNTLEITHISDDLGLERDVVRVWFCNRRQKGKRLALP 404

  Fly   364 ----------------PPNTLGGDMMDGMP-PGHMHHGG----YHP 388
                            ||..:||.::.|.. ||..|.||    |.|
Zfish   405 FDDECVEAQYYEQSPPPPPHMGGTVLPGQGYPGPAHPGGAPALYMP 450

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vvlNP_001303384.1 POU 212..286 CDD:197673 58/73 (79%)
Homeodomain 305..361 CDD:459649 34/55 (62%)
pou5f3NP_571187.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 127..154 4/26 (15%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 187..255 16/69 (23%)
POU 259..323 CDD:197673 52/63 (83%)
Homeodomain 344..400 CDD:459649 34/55 (62%)

Return to query results.
Submit another query.