DRSC/TRiP Functional Genomics Resources

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Protein Alignment vvl and pou3f3b

DIOPT Version :9

Sequence 1:NP_001303384.1 Gene:vvl / 38752 FlyBaseID:FBgn0086680 Length:742 Species:Drosophila melanogaster
Sequence 2:NP_958855.2 Gene:pou3f3b / 30321 ZFINID:ZDB-GENE-980526-140 Length:443 Species:Danio rerio


Alignment Length:374 Identity:204/374 - (54%)
Similarity:223/374 - (59%) Gaps:68/374 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 MALGGGGY-----H---TSSPRSAADAGEMKYMQHHHHHHAAAAAAAHHQLPSSPSPNG------ 66
            ||...||:     |   ||.|.:||.|.            |||.|||....|.|.||.|      
Zfish    62 MAASNGGHMLSHAHQWVTSLPHAAAAAA------------AAAVAAAEAGSPWSSSPVGMTGSPQ 114

  Fly    67 ----QGNGGGLGLGSGSGLGSWSALHPDPWMQTHHTH----HLPAAAAVASAADTVKQEMSHLSQ 123
                :.|.|...|.||:.|.     |..|.:..|.||    ....||.:.|...:.:|:.|.:..
Zfish   115 QQDVKNNSGRDDLHSGTALH-----HRAPHLGPHQTHAGAWGSTTAAHIPSLTGSQQQQQSLIYS 174

  Fly   124 QTR--IQQGMASPHAAWHAPHAGHYAPTGGSPLQYHHAMNGMLHHPAHAVAAAHHQSVAPLHHTL 186
            |..  ...||.||..:....|.|  ...|.:| :..|:.:...||..|    .|||..   ||.:
Zfish   175 QPGGFTVNGMLSPPGSQSLVHPG--LVRGDTP-ELDHSSHHHHHHHQH----QHHQQA---HHGV 229

  Fly   187 RGESPQLHIHHHMGGGDRDAISGGEEDTPTSDDLEAFAKQFKQRRIKLGFTQADVGLALGTLYGN 251
            ....|.                 .:||||||||||.|||||||||||||||||||||||||||||
Zfish   230 NSHDPH-----------------SDEDTPTSDDLEHFAKQFKQRRIKLGFTQADVGLALGTLYGN 277

  Fly   252 VFSQTTICRFEALQLSFKNMCKLKPLLQKWLEEADSTTGSPTSIDKIAAQGRKRKKRTSIEVSVK 316
            |||||||||||||||||||||||||||.||||||||:||||||||||||||||||||||||||||
Zfish   278 VFSQTTICRFEALQLSFKNMCKLKPLLNKWLEEADSSTGSPTSIDKIAAQGRKRKKRTSIEVSVK 342

  Fly   317 GALEQHFHKQPKPSAQEITSLADSLQLEKEVVRVWFCNRRQKEKRMTPP 365
            ||||.||.|.|||||||||||||:|||||||||||||||||||||||||
Zfish   343 GALESHFLKCPKPSAQEITSLADNLQLEKEVVRVWFCNRRQKEKRMTPP 391

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vvlNP_001303384.1 POU 212..286 CDD:197673 71/73 (97%)
Homeobox 307..360 CDD:278475 48/52 (92%)
pou3f3bNP_958855.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 21..40
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 100..150 16/54 (30%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 182..244 23/88 (26%)
POU 238..312 CDD:197673 71/73 (97%)
Homeobox 333..386 CDD:278475 48/52 (92%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170592250
Domainoid 1 1.000 139 1.000 Domainoid score I4736
eggNOG 1 0.900 - - E1_KOG3802
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 324 1.000 Inparanoid score I2470
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D328823at33208
OrthoFinder 1 1.000 - - FOG0000890
OrthoInspector 1 1.000 - - otm24456
orthoMCL 1 0.900 - - OOG6_106207
Panther 1 1.100 - - O PTHR11636
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3844
SonicParanoid 1 1.000 - - X514
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1413.790

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