DRSC/TRiP Functional Genomics Resources

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Protein Alignment vvl and Pou3f2

DIOPT Version :9

Sequence 1:NP_001303384.1 Gene:vvl / 38752 FlyBaseID:FBgn0086680 Length:742 Species:Drosophila melanogaster
Sequence 2:NP_742082.2 Gene:Pou3f2 / 29588 RGDID:61946 Length:445 Species:Rattus norvegicus


Alignment Length:459 Identity:224/459 - (48%)
Similarity:244/459 - (53%) Gaps:103/459 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 AATSYMTPPSGDLDMALGGGGYHTSSPRSAADAGEMKYMQHH-HHHHAAAAAAAHHQLPSSPSPN 65
            |:..:..||.|   |..|.|||..:......|.|.::...|. .|.|....|.:|    ......
  Rat    16 ASIVHAEPPGG---MQQGAGGYREAQSLVQGDYGALQSNGHPLSHAHQWITALSH----GGSGGG 73

  Fly    66 GQGNGGGLGLGSGSGLGS-WSA----------------------LHPDPWMQTHHTHHLPAAAAV 107
            |.|.|||.|.|.|.|.|| ||.                      ||....:|..|...       
  Rat    74 GGGGGGGGGGGGGGGDGSPWSTSPLGQPDIKPSVVVQQGGRGDELHGPGALQQQHQQQ------- 131

  Fly   108 ASAADTVKQEMSHLSQQTRIQQGMASPHAAWHAPH-------------AGHYAPTGGSP---LQY 156
                ...:|:.....||.:.||....||...||.:             |.|..|:.|:.   |.|
  Rat   132 ----QQQQQQQQQQQQQQQQQQQQRPPHLVHHAANHHPGPGAWRSAAAAAHLPPSMGASNGGLLY 192

  Fly   157 HH---AMNGM---------LHHPAHAVAAAHHQSVAPLHHTLRGESPQLHIHHHM---------- 199
            ..   .:|||         |||  |.:..||.:.....||      |..|.|.|.          
  Rat   193 SQPSFTVNGMLGAGGQPAGLHH--HGLRDAHDEPHHADHH------PHPHSHPHQQPPPPPPPQG 249

  Fly   200 ----GGGDRDAISGGEEDTPTSDDLEAFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICR 260
                .|...|..|  :||||||||||.||||||||||||||||||||||||||||||||||||||
  Rat   250 PPGHPGAHHDPHS--DEDTPTSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICR 312

  Fly   261 FEALQLSFKNMCKLKPLLQKWLEEADSTTGSPTSIDKIAAQGRKRKKRTSIEVSVKGALEQHFHK 325
            ||||||||||||||||||.||||||||::|||||||||||||||||||||||||||||||.||.|
  Rat   313 FEALQLSFKNMCKLKPLLNKWLEEADSSSGSPTSIDKIAAQGRKRKKRTSIEVSVKGALESHFLK 377

  Fly   326 QPKPSAQEITSLADSLQLEKEVVRVWFCNRRQKEKRMTPP-NTLGG--DMMDG---MPPGHMHHG 384
            .||||||||||||||||||||||||||||||||||||||| .||.|  |:..|   .||   |||
  Rat   378 CPKPSAQEITSLADSLQLEKEVVRVWFCNRRQKEKRMTPPGGTLPGAEDVYGGSRDTPP---HHG 439

  Fly   385 GYHP 388
            ...|
  Rat   440 VQTP 443

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vvlNP_001303384.1 POU 212..286 CDD:197673 71/73 (97%)
Homeobox 307..360 CDD:278475 49/52 (94%)
Pou3f2NP_742082.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 63..173 28/124 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 203..269 19/75 (25%)
POU 264..338 CDD:197673 71/73 (97%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 336..361 22/24 (92%)
Homeobox 359..412 CDD:278475 49/52 (94%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 411..445 18/36 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 139 1.000 Domainoid score I4657
eggNOG 1 0.900 - - E1_KOG3802
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 325 1.000 Inparanoid score I2400
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D328823at33208
OrthoFinder 1 1.000 - - FOG0000890
OrthoInspector 1 1.000 - - otm45409
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11636
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X514
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1110.930

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