Protein Alignment vvl and Pou5f1

DIOPT Version :9

• Sequence 1: NP_001303384.1
• Gene: vvl / 38752
• FlyBaseID: FBgn0086680
• Length: 742
• Species: Drosophila melanogaster
• Sequence 2: NP_001009178.1
• Gene: Pou5f1 / 294562
• RGDID: 1359491
• Length: 352
• Species: Rattus norvegicus
• Alignment Length: 385
• Identity: 141/385 - (36%)
• Similarity: 174/385 - (45%)
• Gaps: 110/385 - (28%)

  Fly    61 SPSPNGQGNGGGL--------------GLGSGSGLGSWS---ALHPDPWMQTHHTHHLPAAAAVA 108
            ||.|.|.....||              |..||.|:|..|   .:.|.|          ||.....
  Rat    12 SPPPGGGDGSAGLEPGWVDPRTWLSFQGPPSGPGIGPGSEVLGISPCP----------PAYEFCG 66

  Fly   109 SAADTVKQEMSHLSQQTRIQQGMASPHAAWHAPHAG--HYAPTGGSPLQYHHAMNGMLHHPAHA- 170
            .        |::...|..:  |:        .|..|  ...|.|.:..:......|....|..|
  Rat    67 G--------MAYCGPQVGL--GL--------VPQVGVETLQPEGQAGARVESNSEGASSGPCTAR 113

  Fly   171 VAAAHHQSVAPLHHTLRGESPQLHIHHHMGGGDRDAISGGEEDTPTSDDLEAFAKQFKQRRIKLG 235
            .:|...:.|.|        ||:       ...|..|:         ..:||.|||..||:||.||
  Rat   114 PSAVKLEKVEP--------SPE-------ESQDMKAL---------QKELEQFAKLLKQKRITLG 154

  Fly   236 FTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLQKWLEEADSTTGSPTSIDKIA- 299
            :|||||||.||.|:|.||||||||||||||||.||||||:|||:||:||||:.    .::.:|.
  Rat   155 YTQADVGLTLGVLFGKVFSQTTICRFEALQLSLKNMCKLRPLLEKWVEEADNN----ENLQEICK 215

  Fly   300 ----AQGRKRKKRTSIEVSVKGALEQHFHKQPKPSAQEITSLADSLQLEKEVVRVWFCNRRQKEK 360
                .|.||| ||||||..|:..||..|.:.||||.|:|||:|..|.||::||||||||||||.|
  Rat   216 SETLVQARKR-KRTSIENRVRWNLENMFLQCPKPSLQQITSIAKQLGLERDVVRVWFCNRRQKGK 279

  Fly   361 RMT----------------PPNTLGGDMMDGMPPG-HMHHGGYHPHHDMHGSPMGTHSHS 403
            |.:                |    ||.:...:||| |....||       |||..|..:|
  Rat   280 RSSIEYSQREEYEAAGKPFP----GGAVSFPLPPGPHFGAPGY-------GSPHFTTLYS 328

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
vvl	NP_001303384.1	POU	212..286	CDD:197673	51/73 (70%)
		Homeobox	307..360	CDD:278475	34/52 (65%)
Pou5f1	NP_001009178.1	POU	131..205	CDD:197673	53/82 (65%)
		Homeobox	226..280	CDD:395001	34/53 (64%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C166350545
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG3802
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR11636
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	5	4.840