Protein Alignment vvl and Pou1f1

DIOPT Version :10

• Sequence 1: NP_001303384.1
• Gene: vvl / 38752
• FlyBaseID: FBgn0086680
• Length: 742
• Species: Drosophila melanogaster
• Sequence 2: XP_006248036.1
• Gene: Pou1f1 / 25517
• RGDID: 3367
• Length: 317
• Species: Rattus norvegicus
• Alignment Length: 323
• Identity: 123/323 - (38%)
• Similarity: 163/323 - (50%)
• Gaps: 58/323 - (17%)

  Fly    46 HHAAAAAAAHHQLPSSPSPNGQGNGGGLGLGSGSGLGSWSALHPDPWMQTHHTHHLPAAAAVASA 110
            ||:||..     ||:|                                 .|.|:.:....::.|.
  Rat    28 HHSAAEG-----LPAS---------------------------------NHATNVMSTVPSILSL 54

  Fly   111 ADTVKQEMSHLSQQTRIQQGMASPHAAWHAPHAGHYAPTGGSPLQYHHAMNGML-----HHPAHA 170
            ..|.|...::.|..|   .|..:....:..|.. ||   |..|..| ..|.|.|     ..|.|.
  Rat    55 IQTPKCLHTYFSMTT---MGNTATGLHYSVPSC-HY---GNQPSTY-GVMAGTLTPCLYKFPDHT 111

  Fly   171 VAAAHHQSVAPLHHTLRGESPQL-HIHHHMGGGDRDAISGGEEDTPTSDDLEAFAKQFKQRRIKL 234
            ::    ....|||..|..|.|.. .....:....:......:.|:|...:||.||.:||.|||||
  Rat   112 LS----HGFPPLHQPLLAEDPTASEFKQELRRKSKLVEEPIDMDSPEIRELEQFANEFKVRRIKL 172

  Fly   235 GFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLQKWLEEADSTTGSPTSIDKIA 299
            |:||.:||.||..::|:.||||||||||.|||||||.||||.:|.||||||:. .|:..: :|:.
  Rat   173 GYTQTNVGEALAAVHGSEFSQTTICRFENLQLSFKNACKLKAILSKWLEEAEQ-VGALYN-EKVG 235

  Fly   300 AQGRKRKKRTSIEVSVKGALEQHFHKQPKPSAQEITSLADSLQLEKEVVRVWFCNRRQKEKRM 362
            |..||||:||:|.::.|.|||:||.:..|||:|||..:|:.|.|||||||||||||||:|||:
  Rat   236 ANERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 298

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
vvl	NP_001303384.1	POU	212..286	CDD:197673	48/73 (66%)
		Homeodomain	305..361	CDD:459649	35/55 (64%)
Pou1f1	XP_006248036.1	POU	150..224	CDD:197673	48/73 (66%)
		Homeodomain	241..297	CDD:459649	35/55 (64%)