DRSC/TRiP Functional Genomics Resources

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Protein Alignment vvl and Hdx

DIOPT Version :10

Sequence 1:NP_001303384.1 Gene:vvl / 38752 FlyBaseID:FBgn0086680 Length:742 Species:Drosophila melanogaster
Sequence 2:NP_001074018.1 Gene:Hdx / 245596 MGIID:2685226 Length:692 Species:Mus musculus


Alignment Length:454 Identity:78/454 - (17%)
Similarity:131/454 - (28%) Gaps:164/454 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   308 RTSIEVSVKGALEQHFH----KQPKPSAQEITSLADSLQLEKEVVRVWFCNRRQKEK-------- 360
            |:...|..:..|::::.    .|.|...|.|...|...:|:..|||.|..|:|:|..        
Mouse     4 RSVFTVEQQRILQRYYENGMTNQSKNCFQLILQCAQETKLDFSVVRTWVGNKRRKMSSKSCESGA 68

  Fly   361 -------RMTPPNTLGGDMMDGMPPGHMHHGGYHPHHDM----------HGSPMGTHSH------ 402
                   .:..|:....::::...|..........::|:          ..|..||..|      
Mouse    69 AGTVSGTSLAAPDITVRNVVNIARPSSQQSSWTSANNDVIVTGIYSPVSSSSKQGTTKHTNTQIT 133

  Fly   403 -SHSPPMLSPQNMQSSAVAAH----QLAAH----------------XQSEIQESNSAAAASTPAS 446
             :|..|:....|...:.:..|    :..||                 |:.:..:.::....|..|
Mouse   134 EAHKIPIQKAANKNDTELQLHIPVQRQVAHCKNASVLLGEKTIILSRQTSVLNAGNSVYNHTKKS 198

  Fly   447 LNSLSQQQQQQQQQQQQQHQQQ---------QQHQQQQHTPNTPSSSAGSSATMTS--------- 493
            ..|...|..:....|:....|:         |:..:.:|......:..|...|:..         
Mouse   199 YGSSPVQASEMTVPQKPSVCQRPCKIEPVGIQRSYKPEHAGLASHNLCGQKPTIRDPCCRTQNLE 263

  Fly   494 --QVMS------PQSPLGSSSAGNQAN-------------------------------------- 512
              :|.|      ||..||.:|....|:                                      
Mouse   264 IREVFSLAVSDYPQRILGGNSTQKPASAEGTCLSIAMETGDAEDEYAREEELASMGAQITSYSRF 328

  Fly   513 -NNNNNNNNNNSSTN--NNNNNNNNEEQVKHHQQQQQQQQASSIAAAAAAAMYMDPMRYQ-HPHH 573
             .:.|:....|.|||  ....|..|.:.|....                   ..|.:.|| ..:|
Mouse   329 YESGNSLRAENQSTNLPGPGRNLPNSQMVNIRD-------------------LSDNVLYQTRDYH 374

  Fly   574 PHPHPHQH-------PHLNPAH---HPHLFHTSDQLQHSQQQTVGGTSSNSQLSPGAGSNSGLP 627
            ..|....|       .:.||:.   .|| |.:|:||:.||.|      :|.|:|    .|..:|
Mouse   375 LTPRTSLHTASSTMYSNTNPSRSNFSPH-FVSSNQLRLSQNQ------NNYQIS----GNLSVP 427

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vvlNP_001303384.1 POU 212..286 CDD:197673
Homeodomain 305..361 CDD:459649 16/71 (23%)
HdxNP_001074018.1 HOX 4..59 CDD:197696 15/54 (28%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 117..136 4/18 (22%)
homeodomain 441..497 CDD:238039
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 505..541
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 647..692
Blue background indicates that the domain is not in the aligned region.

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