DRSC/TRiP Functional Genomics Resources

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Protein Alignment vvl and Pou3f3

DIOPT Version :9

Sequence 1:NP_001303384.1 Gene:vvl / 38752 FlyBaseID:FBgn0086680 Length:742 Species:Drosophila melanogaster
Sequence 2:NP_032926.2 Gene:Pou3f3 / 18993 MGIID:102564 Length:497 Species:Mus musculus


Alignment Length:470 Identity:227/470 - (48%)
Similarity:248/470 - (52%) Gaps:128/470 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 GGGGYHTSSPRSAA--------DAGEMK-----------------YMQHHHHH------HAAAAA 52
            ||||   ..|.|||        |...:|                 :|..|.|.      ||||||
Mouse    46 GGGG---MQPGSAAVTSGAYRGDPSSVKMVQSDFMQGAMAASNGGHMLSHAHQWVTALPHAAAAA 107

  Fly    53 AA----------------------HHQLPSSPSPNGQGNG--GGLG---LGSGSGLGSWSALHPD 90
            ||                      ..|.|..|.|..||..  ||.|   |.:|:.|......|..
Mouse   108 AAAAAAAVEASSPWSGSAVGMAGSPQQPPQPPPPPPQGPDVKGGAGREDLHAGTALHHRGPPHLG 172

  Fly    91 PWMQTHHTHHLP---AAAAVASAADTVKQEMSHLSQQTRIQQGMASPHAAWHAPHAGHYAPTGGS 152
            |.....|..| |   .|||.|:||.......:||......||         ..|.:..|:..|| 
Mouse   173 PPPPPPHQGH-PGGWGAAAAAAAAAAAAAAAAHLPSMAGGQQ---------PPPQSLLYSQPGG- 226

  Fly   153 PLQYHHAMNGMLHHP-----AHAVAAAHHQSVAPLHHTL-RGESPQL---------HIH------ 196
                 ..:||||..|     ....|....||:  :|..| ||::|:|         |.|      
Mouse   227 -----FTVNGMLSAPPGPGGGGGGAGGGAQSL--VHPGLVRGDTPELAEHHHHHHHHAHPHPPHP 284

  Fly   197 -------HHMGGGDRDAISG----GEEDTPTSDDLEAFAKQFKQRRIKLGFTQADVGLALGTLYG 250
                   ||.|||....::.    .:||||||||||.||||||||||||||||||||||||||||
Mouse   285 HHAQGPPHHGGGGAGPGLNSHDPHSDEDTPTSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYG 349

  Fly   251 NVFSQTTICRFEALQLSFKNMCKLKPLLQKWLEEADSTTGSPTSIDKIAAQGRKRKKRTSIEVSV 315
            ||||||||||||||||||||||||||||.||||||||:|||||||||||||||||||||||||||
Mouse   350 NVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEEADSSTGSPTSIDKIAAQGRKRKKRTSIEVSV 414

  Fly   316 KGALEQHFHKQPKPSAQEITSLADSLQLEKEVVRVWFCNRRQKEKRMTPP-----------NTLG 369
            |||||.||.|.|||||||||:|||||||||||||||||||||||||||||           :.:|
Mouse   415 KGALESHFLKCPKPSAQEITNLADSLQLEKEVVRVWFCNRRQKEKRMTPPGIQQQTPDDVYSQVG 479

  Fly   370 GDMMDGMPPGHMHHG 384
            ....|..||   |||
Mouse   480 TVSADTPPP---HHG 491

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vvlNP_001303384.1 POU 212..286 CDD:197673 71/73 (97%)
Homeobox 307..360 CDD:278475 48/52 (92%)
Pou3f3NP_032926.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 32..62 8/18 (44%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 121..189 17/68 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 230..316 25/87 (29%)
POU 311..385 CDD:197673 71/73 (97%)
Homeobox 406..460 CDD:395001 49/53 (92%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 458..497 14/37 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 139 1.000 Domainoid score I4762
eggNOG 1 0.900 - - E1_KOG3802
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 329 1.000 Inparanoid score I2431
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000890
OrthoInspector 1 1.000 - - otm43337
orthoMCL 1 0.900 - - OOG6_106207
Panther 1 1.100 - - O PTHR11636
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3844
SonicParanoid 1 1.000 - - X514
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1211.850

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