DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment vvl and Pou1f1

DIOPT Version :10

Sequence 1:NP_001303384.1 Gene:vvl / 38752 FlyBaseID:FBgn0086680 Length:742 Species:Drosophila melanogaster
Sequence 2:NP_032875.1 Gene:Pou1f1 / 18736 MGIID:97588 Length:291 Species:Mus musculus


Alignment Length:253 Identity:113/253 - (44%)
Similarity:141/253 - (55%) Gaps:47/253 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   153 PLQYHHAMNGMLHHPAHA-----VAAAHHQSVAPLH------------------------HTLRG 188
            ||:.||:....|....||     .|...|.||...|                        |||..
Mouse    24 PLRMHHSAAECLPASNHATNVMSTATGLHYSVPSCHYGNQPSTYGVMAGSLTPCLYKFPDHTLSH 88

  Fly   189 ESPQLHIHHHMGGGDRDAISGGEE--------------DTPTSDDLEAFAKQFKQRRIKLGFTQA 239
            ..|.|  |..:...|..|....:|              |:|...:||.||.:||.||||||:||.
Mouse    89 GFPPL--HQPLLAEDPAASEFKQELRRKSKLVEEPIDMDSPEIRELEQFANEFKVRRIKLGYTQT 151

  Fly   240 DVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLQKWLEEADSTTGSPTSIDKIAAQGRK 304
            :||.||..::|:.||||||||||.|||||||.||||.:|.||||||:. .|:..: :|:.|..||
Mouse   152 NVGEALAAVHGSEFSQTTICRFENLQLSFKNACKLKAILSKWLEEAEQ-VGALYN-EKVGANERK 214

  Fly   305 RKKRTSIEVSVKGALEQHFHKQPKPSAQEITSLADSLQLEKEVVRVWFCNRRQKEKRM 362
            ||:||:|.|:.|.|||:||.:..|||:|||..:|:.|.|||||||||||||||:|||:
Mouse   215 RKRRTTISVAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 272

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vvlNP_001303384.1 POU 212..286 CDD:197673 49/87 (56%)
Homeodomain 305..361 CDD:459649 36/55 (65%)
Pou1f1NP_032875.1 9aaTAD. /evidence=ECO:0000250|UniProtKB:P28069 5..13
POU 124..198 CDD:197673 48/73 (66%)
Homeodomain 215..271 CDD:459649 36/55 (65%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.