DRSC/TRiP Functional Genomics Resources

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Protein Alignment vvl and ceh-6

DIOPT Version :10

Sequence 1:NP_001303384.1 Gene:vvl / 38752 FlyBaseID:FBgn0086680 Length:742 Species:Drosophila melanogaster
Sequence 2:NP_492304.1 Gene:ceh-6 / 172640 WormBaseID:WBGene00000431 Length:380 Species:Caenorhabditis elegans


Alignment Length:389 Identity:165/389 - (42%)
Similarity:201/389 - (51%) Gaps:96/389 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 AAAAAAAHHQLPSSPSPNGQGNGGGLGLGSGSGLGSWSALHPDPWMQTHHTHH-------LPAA- 104
            ::.:|:|....|||.              :|||:...:.|      ..:|.||       :.|| 
 Worm    11 SSLSASASDSEPSSL--------------NGSGISDQNIL------PNYHLHHHLINENEMEAAN 55

  Fly   105 -AAVASAADTVKQEMSH---LSQQTRI-----QQGMASPHAAWHAPHAGHYAPTGGSPLQYHHAM 160
             |.|........|:..|   |.||.::     |...|.||.|...|...|..|:           
 Worm    56 YAQVIKPTCEAFQDWPHTPMLYQQPQLHFMLPQHDWAYPHLAQSLPPPHHLTPS----------- 109

  Fly   161 NGMLHHPAHAVAAAHHQSVAPL--HHTLRGESPQLHIHHHM------------------------ 199
                   ..|||||...|.:.:  ..::...:|...|...:                        
 Worm   110 -------TAAVAAATIASQSSIINQTSVVTSTPSCQIKQEVERPEIIQRLMPPWPPAYQFSCDDS 167

  Fly   200 -----GGGDRDAISGGEEDTPTS--DDLEAFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTT 257
                 .||....:|...:|:..:  ||||.|||||||||||||:||||||:||||||||:|||||
 Worm   168 GSVSGAGGPHQPLSDISDDSEQTCPDDLEGFAKQFKQRRIKLGYTQADVGVALGTLYGNIFSQTT 232

  Fly   258 ICRFEALQLSFKNMCKLKPLLQKWLEEADSTTGSPTS-IDKIAAQ-GRKRKKRTSIEVSVKGALE 320
            |||||||||||||||||||||.|||||||||||||.| .:|:..| ||||||||||||:||..||
 Worm   233 ICRFEALQLSFKNMCKLKPLLFKWLEEADSTTGSPNSTFEKMTGQAGRKRKKRTSIEVNVKSRLE 297

  Fly   321 QHFHKQPKPSAQEITSLADSLQLEKEVVRVWFCNRRQKEKRMTPPNTLGGDMMDGMPPGHMHHG 384
            .||....||:|||||.:|..|||||||||||||||||||||:.|      :..|...|..:::|
 Worm   298 FHFQSNQKPNAQEITQVAMELQLEKEVVRVWFCNRRQKEKRIAP------NQYDAPHPMALNNG 355

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vvlNP_001303384.1 POU 212..286 CDD:197673 63/75 (84%)
Homeodomain 305..361 CDD:459649 42/55 (76%)
ceh-6NP_492304.1 POU 188..261 CDD:197673 62/72 (86%)
Homeodomain 282..338 CDD:459649 42/55 (76%)

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