DRSC/TRiP Functional Genomics Resources

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Protein Alignment vvl and Pou4f2

DIOPT Version :9

Sequence 1:NP_001303384.1 Gene:vvl / 38752 FlyBaseID:FBgn0086680 Length:742 Species:Drosophila melanogaster
Sequence 2:NP_599182.1 Gene:Pou4f2 / 171355 RGDID:620075 Length:412 Species:Rattus norvegicus


Alignment Length:445 Identity:147/445 - (33%)
Similarity:196/445 - (44%) Gaps:136/445 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 SYMTPPSGDLDMALGGGGYHTSSPRSAADAGEMKYMQHHHHHHAAAAAAAHHQLPSSPSPNGQGN 69
            ::..|.:|.|.:.......|::||.|:|.              ||.:|::    |||.|..|.|.
  Rat    11 AFSMPHAGSLHVEPKYSALHSASPGSSAP--------------AAPSASS----PSSSSNAGSGG 57

  Fly    70 GGGLG--------------LGSGSGLGSWS-----ALHPDP------------------------ 91
            |||.|              .|||.|.|..|     |..|.|                        
  Rat    58 GGGGGGGGGGGGRSSSSSSSGSGGGGGGGSEAMRRACLPTPPSNIFGGLDESLLARAEALAAVDI 122

  Fly    92 --WMQTHH-------------THHLPAAAAVASAADTVKQEMSHLSQQTRIQQGMASPHAAWHAP 141
              ..::||             |:|........|||.:....:||.|       .:|..|...|..
  Rat   123 VSQSKSHHHHPPHHSPFKPDATYHTMNTIPCTSAASSSSVPISHPS-------ALAGTHHHHHHH 180

  Fly   142 HAGHYAPTGGSPLQYHHAMNG-MLHH--------------------PAHAVAAAHHQSVAPLHHT 185
            |..|:.|        |.|:.| :|.|                    |||   |.|..::.|:|  
  Rat   181 HHHHHQP--------HQALEGELLEHLSPGLALGAMAGPDGTVVSTPAH---APHMATMNPMH-- 232

  Fly   186 LRGESPQLHIH---HHMG-GGDRDAISGGEEDTPTSDDLEAFAKQFKQRRIKLGFTQADVGLALG 246
             :......|.|   .||| ..|.||         ...||||||::|||||||||.||||||.||.
  Rat   233 -QAALSMAHAHGLPSHMGCMSDVDA---------DPRDLEAFAERFKQRRIKLGVTQADVGSALA 287

  Fly   247 TL----YGNVFSQTTICRFEALQLSFKNMCKLKPLLQKWLEEADSTTGSPTSIDKIAAQGRKRKK 307
            .|    .|:: ||:||||||:|.||..||..|||:||.|||||:.:.....:..::.....|::|
  Rat   288 NLKIPGVGSL-SQSTICRFESLTLSHNNMIALKPILQAWLEEAEKSHREKLTKPELFNGAEKKRK 351

  Fly   308 RTSIEVSVKGALEQHFHKQPKPSAQEITSLADSLQLEKEVVRVWFCNRRQKEKRM 362
            ||||....|.:||.:|..||:||:::|.::|:.|.|:|.||||||||:|||:|||
  Rat   352 RTSIAAPEKRSLEAYFAIQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRM 406

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vvlNP_001303384.1 POU 212..286 CDD:197673 47/77 (61%)
Homeobox 307..360 CDD:278475 29/52 (56%)
Pou4f2NP_599182.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 29..96 25/84 (30%)
Required for transcriptional activation. /evidence=ECO:0000250|UniProtKB:Q63934 94..240 30/166 (18%)
POU-IV box 113..122 0/8 (0%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 123..191 17/82 (21%)
Nuclear speckle targeting signal. /evidence=ECO:0000250|UniProtKB:Q12837 174..188 5/21 (24%)
Required for DNA-binding and transcriptional repression. /evidence=ECO:0000250|UniProtKB:Q63934 241..412 88/176 (50%)
POU 253..330 CDD:197673 50/86 (58%)
Homeobox 351..404 CDD:278475 29/52 (56%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166350525
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3802
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.740

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