DRSC/TRiP Functional Genomics Resources

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Protein Alignment vvl and pdm3

DIOPT Version :10

Sequence 1:NP_001303384.1 Gene:vvl / 38752 FlyBaseID:FBgn0086680 Length:742 Species:Drosophila melanogaster
Sequence 2:XP_061509788.1 Gene:pdm3 / 1280360 VectorBaseID:AGAMI1_003138 Length:871 Species:Anopheles gambiae


Alignment Length:581 Identity:139/581 - (23%)
Similarity:184/581 - (31%) Gaps:236/581 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 AATSYMTPPSGDLDMALGGGGYHTSSPRSAADAGE-------MKYMQHHHHHHAAAAAAAHHQLP 59
            |:.....||........|||...|....|||.|..       :.|..||||||       ||...
Mosquito   290 ASGGLFAPPRDAQGTGSGGGLLSTQLLGSAAGAHAQQHSPKGLHYANHHHHHH-------HHHGD 347

  Fly    60 SSPSPNGQGNGGGLGLGSG---SGLGSWSALHPDPWMQTHHTHHLPAAAAVASAA---------D 112
            ....||...........|.   ||....|::|     .||...|||...:::||:         .
Mosquito   348 VKFKPNASSTSSSSCSSSSVVVSGASCMSSVH-----DTHRQQHLPPGHSLSSASASSNTLDHRS 407

  Fly   113 TVKQEMSHLSQQTRIQQG---------MASPHAAWHAPHAGHYAPTGGSPLQYH----------- 157
            .|...|:....:.::|.|         .:||..:.|:..|. ||....||....           
Mosquito   408 AVAGRMTPDMHRVKLQAGDSPKRISLVASSPPVSTHSRPAS-YASCSSSPYDKSMTLKRALSPPA 471

  Fly   158 ---------------HAMNGMLHHPAH-AVAAAH------------------------------- 175
                           |:.||.|....| |::||.                               
Mosquito   472 TLNCTTPSSSSSGSGHSSNGHLQVNVHSAISAASPRSPSDASAINRLGLPTGGVDLLPSKSKLSP 536

  Fly   176 -------------------HQSVAPLHH------------------------------------- 184
                               |.||:||||                                     
Mosquito   537 GGSSSSGLPLTKDQPSSHPHASVSPLHHHSSSGPSAPGSTGRPGSCDLELIEQHQHQQQQHHRAP 601

  Fly   185 ---TLRGESP-------------QLHIHH--------------------HMGGGDRDAISGGE-- 211
               .|..|.|             |...||                    |....|.|| |..|  
Mosquito   602 SADDLELEKPSTVGSSSGTVHQLQKRSHHSAASTPPPKLSPAGSTGRLSHSDDDDDDA-SNHEFL 665

  Fly   212 EDTPTS----------------DDLEAFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTIC- 259
            |:.|..                ||::.|||.||.||:.||.||..||.||....|..:||:.|| 
Mosquito   666 EEHPNELTINQTNCNVVDGIDLDDIKEFAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICS 730

  Fly   260 ------------------RFEALQLSFKNMCKLKPLLQKWLEEADST------TGSPTSIDKIAA 300
                              .||.|.::.|:..|:||:|::|::||:.:      :|.....|.|..
Mosquito   731 ALAAQMYCAAQLSSQQQQMFEKLDITPKSAQKIKPVLERWMKEAEESHSSRYKSGQNHVPDFIGV 795

  Fly   301 Q-GRKRKKRTSIEVSVKGALEQHFHKQPKPSAQEITSLADSLQLEKEVVRVWFCNRRQKEK 360
            : .:|||:|||........|..||.:...||..|||.||..|..|:||:|:||||:||..|
Mosquito   796 EPSKKRKRRTSFTPQALELLNGHFERNTHPSGTEITGLAHQLGYEREVIRIWFCNKRQALK 856

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vvlNP_001303384.1 POU 212..286 CDD:197673 34/108 (31%)
Homeodomain 305..361 CDD:459649 27/56 (48%)
pdm3XP_061509788.1 None

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