Protein Alignment vvl and Pou4f1

DIOPT Version :10

• Sequence 1: NP_001303384.1
• Gene: vvl / 38752
• FlyBaseID: FBgn0086680
• Length: 742
• Species: Drosophila melanogaster
• Sequence 2: NP_001406467.1
• Gene: Pou4f1 / 114503
• RGDID: 620074
• Length: 421
• Species: Rattus norvegicus
• Alignment Length: 412
• Identity: 143/412 - (34%)
• Similarity: 184/412 - (44%)
• Gaps: 123/412 - (29%)

  Fly    14 LDMALGGG---------GYHT--SSPRSAADAGEMKYMQHHHHHHAA------------------ 49
            :|:|:..|         .|||  |.|.::.....:.:..||||||.|
  Rat    64 VDIAVSQGKSHPFKPDATYHTMNSVPCTSTSTVPLAHHHHHHHHHQALEPGDLLDHISSPSLALM 128

  Fly    50 -----AAAA-----AHHQL-----------PSSPSPNGQGNGGGLGLGS---GSGLGSWSALHPD 90
                 |.||     ||...           |....|.|.|.|||.|.|.   |.||...|| ||.
  Rat   129 AGAGGAGAAGGGGGAHDGPGGAGGPGGGGGPGGGGPGGGGGGGGPGGGGGGPGGGLLGGSA-HPH 192

  Fly    91 PWMQTHHTHHL--PAAAAVASAADTVKQEMSHLSQQTRIQQGMASPHAAWHAPHAGHYAPTGGSP 153
            |.|  |...||  |||||..:                                     .|:|
  Rat   193 PHM--HGLGHLSHPAAAAAMN-------------------------------------MPSG--- 215

  Fly   154 LQYHHAMNGMLHHPAHAVAAAHHQSVAPLHHTLRGE----SPQLHIHHHMGGGDRDAISGGEEDT 214
                      |.||....|||||.:.|.......|:    |....:   :|.....:|...:.|
  Rat   216 ----------LPHPGLVAAAAHHGAAAAAAAAAAGQVAAASAAAAV---VGAAGLASICDSDTD- 266

  Fly   215 PTSDDLEAFAKQFKQRRIKLGFTQADVGLALGTL----YGNVFSQTTICRFEALQLSFKNMCKLK 275
              ..:|||||::|||||||||.||||||.||..|    .|:: ||:||||||:|.||..||..||
  Rat   267 --PRELEAFAERFKQRRIKLGVTQADVGSALANLKIPGVGSL-SQSTICRFESLTLSHNNMIALK 328

  Fly   276 PLLQKWLEEADSTTGSPTSIDKIAAQGRKRKKRTSIEVSVKGALEQHFHKQPKPSAQEITSLADS 340
            |:||.|||||:.......:..::...|.|::|||||....|.:||.:|..||:||:::|.::|:.
  Rat   329 PILQAWLEEAEGAQREKMNKPELFNGGEKKRKRTSIAAPEKRSLEAYFAVQPRPSSEKIAAIAEK 393

  Fly   341 LQLEKEVVRVWFCNRRQKEKRM 362
            |.|:|.||||||||:|||:|||
  Rat   394 LDLKKNVVRVWFCNQRQKQKRM 415

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
vvl	NP_001303384.1	POU	212..286	CDD:197673	47/77 (61%)
		Homeodomain	305..361	CDD:459649	29/55 (53%)
Pou4f1	NP_001406467.1	POU	262..339	CDD:197673	47/80 (59%)
		Homeodomain	358..414	CDD:459649	29/55 (53%)