DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment vvl and pou4f2

DIOPT Version :9

Sequence 1:NP_001303384.1 Gene:vvl / 38752 FlyBaseID:FBgn0086680 Length:742 Species:Drosophila melanogaster
Sequence 2:XP_002938977.2 Gene:pou4f2 / 100498428 XenbaseID:XB-GENE-854899 Length:379 Species:Xenopus tropicalis


Alignment Length:380 Identity:137/380 - (36%)
Similarity:182/380 - (47%) Gaps:97/380 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 TPPS---GDLDMALGGGGYHTSSPRSAAD-AGEMKYMQHHHHHHAAAAAAAHHQLPSSPSPNGQG 68
            ||||   |.||.:|    ...:...:|.| ..:.|...||||||     ..||            
 Frog    66 TPPSNIFGGLDESL----LARAEALAAVDIVSQCKSQHHHHHHH-----TPHH------------ 109

  Fly    69 NGGGLGLGSGSGLGSWSALHPDPWMQTHHT-HHLPAAAAVASAADTVKQEMSHLSQQTRIQQGMA 132
                            |...||   .|:|| :.:|..:|.:|::..:    ||.|       |:|
 Frog   110 ----------------SPFKPD---ATYHTMNTIPCTSASSSSSVPI----SHPS-------GVA 144

  Fly   133 SPHAAWHAPHAGHYAPTGGSPLQYHHAMNGM------------LHHPAHAVAAAHHQSVAPLHHT 185
            ..|  .|..|..|:.|..|..|.  |...|:            :..|.|    .|..|:.|:|  
 Frog   145 GSH--HHHHHHHHHQPLEGELLD--HITPGLTLGAITGPDGSVVSTPGH----PHMASMNPMH-- 199

  Fly   186 LRGESPQLHIH---HHMG-GGDRDAISGGEEDTPTSDDLEAFAKQFKQRRIKLGFTQADVGLALG 246
             :......|.|   .||| ..|.||         ...||||||::|||||||||.||||||.||.
 Frog   200 -QAALSMAHAHGLPTHMGCMSDVDA---------DPRDLEAFAERFKQRRIKLGVTQADVGSALA 254

  Fly   247 TL----YGNVFSQTTICRFEALQLSFKNMCKLKPLLQKWLEEADSTTGSPTSIDKIAAQGRKRKK 307
            .|    .|:: ||:||||||:|.||..||..|||:||.|||||:.:.....:..::.....|::|
 Frog   255 NLKIPGVGSL-SQSTICRFESLTLSHNNMIALKPILQAWLEEAEKSHREKLTKPELFNGAEKKRK 318

  Fly   308 RTSIEVSVKGALEQHFHKQPKPSAQEITSLADSLQLEKEVVRVWFCNRRQKEKRM 362
            ||||....|.:||.:|..||:||:::|.::|:.|.|:|.||||||||:|||:|||
 Frog   319 RTSIAAPEKRSLEAYFAIQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRM 373

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vvlNP_001303384.1 POU 212..286 CDD:197673 47/77 (61%)
Homeobox 307..360 CDD:278475 29/52 (56%)
pou4f2XP_002938977.2 POU 220..297 CDD:197673 50/86 (58%)
Homeobox 318..372 CDD:395001 29/53 (55%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

Return to query results.
Submit another query.