DRSC/TRiP Functional Genomics Resources

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Protein Alignment vvl and pou5f3.3

DIOPT Version :9

Sequence 1:NP_001303384.1 Gene:vvl / 38752 FlyBaseID:FBgn0086680 Length:742 Species:Drosophila melanogaster
Sequence 2:NP_001123836.1 Gene:pou5f3.3 / 100170593 XenbaseID:XB-GENE-5903504 Length:423 Species:Xenopus tropicalis


Alignment Length:443 Identity:140/443 - (31%)
Similarity:194/443 - (43%) Gaps:122/443 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 YMTPPS-----GDLDMALGGG------------GYHTSSPRSAADAGEMKYMQHHHHHHAAAAAA 53
            :..||:     |..|...||.            .:..|:...|..:|:......:...|   .:.
 Frog    44 FHVPPAIKSEYGAQDEVTGGSCHAAPFDWHLYPHFQFSNQVGALSSGDPSPEGRNEEDH---GSI 105

  Fly    54 AHHQLPSSPSPNG---------------QGNGGGLGLGSGSGLGSWSALHPDPWMQTHHTHHLPA 103
            :..:...:||||.               |||      .:|..||..|..|||...:...:...|.
 Frog   106 SEERSSGTPSPNSPMVPSYAQYWHHAPWQGN------PTGQALGLPSRAHPDGGEKPQQSDCSPT 164

  Fly   104 AAAVASAADTVKQEMSHLSQQTRIQQGMASPHAAWHAPHAGHYAPTGGSPLQYHHAMNGMLHHPA 168
            |:..:.|::|..:|:|. :..:|.::|:.||                 ||   ::|..|      
 Frog   165 ASLESGASNTEDEEVSS-ALSSRAERGLCSP-----------------SP---NNASFG------ 202

  Fly   169 HAVAAAHHQSVAPLHHTLRGESPQLHIHHHMGGGDRDAISGGEEDTPTSDDLEAFAKQFKQRRIK 233
                                                   ||.|||..|.:::|.|||:.||:|:.
 Frog   203 ---------------------------------------SGNEEDGTTLEEMEEFAKELKQKRVA 228

  Fly   234 LGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLQKWLEEADSTTGSPTSIDK- 297
            ||:||.|:|.|||.|||.:||||||||||:|||:|||||||||||::||.||::.......|.| 
 Frog   229 LGYTQGDIGHALGILYGKMFSQTTICRFESLQLTFKNMCKLKPLLEQWLGEAENNDNLQEMIHKA 293

  Fly   298 -IAAQGRKRKKRTSIEVSVKGALEQHFHKQPKPSAQEITSLADSLQLEKEVVRVWFCNRRQKEK- 360
             :..|.||||.||..:..:||.||.||....||.|:|:..:|..|.|||:|||||||||||||| 
 Frog   294 QLEEQNRKRKMRTCFDSVLKGRLEGHFMCNQKPGARELAEIAKELGLEKDVVRVWFCNRRQKEKS 358

  Fly   361 --RMTPPNTLGGDMMDGMPPGHMHHGGYHPHHDMHGSPMGTHSHSHSPPMLSP 411
              ||:..:...|.......|..      |...|...:|:    |.:.||...|
 Frog   359 KSRMSKAHEFVGGASPVPSPAE------HISQDYGLAPL----HPNRPPFYPP 401

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vvlNP_001303384.1 POU 212..286 CDD:197673 49/73 (67%)
Homeobox 307..360 CDD:278475 29/52 (56%)
pou5f3.3NP_001123836.1 PTZ00395 <7..>177 CDD:185594 28/141 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 85..211 36/200 (18%)
POU 207..281 CDD:197673 49/73 (67%)
Homeobox 305..357 CDD:365835 29/51 (57%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11636
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

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