DRSC/TRiP Functional Genomics Resources

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Protein Alignment vvl and pou3f4

DIOPT Version :10

Sequence 1:NP_001303384.1 Gene:vvl / 38752 FlyBaseID:FBgn0086680 Length:742 Species:Drosophila melanogaster
Sequence 2:NP_001090728.1 Gene:pou3f4 / 100036711 XenbaseID:XB-GENE-479667 Length:360 Species:Xenopus tropicalis


Alignment Length:380 Identity:186/380 - (48%)
Similarity:210/380 - (55%) Gaps:93/380 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    77 SGSGLGSWSAL--------HPDPWMQTHHTHHLPAAAA------VASAAD----TVKQEMSHLSQ 123
            |.|.|...||:        :|...:|:.:...:|:...      |.|.:|    :.....|.|.|
 Frog    13 SSSSLVHDSAIMQQGSPFRNPQKLLQSDYLQGVPSNGHPLGHHWVTSLSDANPWSTSLGSSPLDQ 77

  Fly   124 Q------TRIQQGM----ASPHAAWHAPHAGHYAPTGGSPL----------------QYHHAMNG 162
            |      ..:|.|.    .|||...|:||..|....|.||.                |....::|
 Frog    78 QDIKPGREDLQLGAIIHHRSPHVTHHSPHTNHPNAWGASPAHNSSLTSNGQPINVYSQSGFTVSG 142

  Fly   163 MLHH-------PAHAVAAAHHQSVAPLHHTLRGESPQLHIHHHMGGGDRDAISGGEEDTPTSDDL 220
            ||.|       |:....:.|.....|:.|   |:....|...|           .:|:|||||:|
 Frog   143 MLDHGGLTPPPPSGTTQSLHPVLREPVDH---GDLGSHHCQDH-----------SDEETPTSDEL 193

  Fly   221 EAFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLQKWLEEA 285
            |.|||||||||||||||||||||||||||||||||.||||||||||||||||||||||.||||||
 Frog   194 EQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQATICRFEALQLSFKNMCKLKPLLNKWLEEA 258

  Fly   286 DSTTGSPTSIDKIAAQGRKRKKRTSIEVSVKGALEQHFHKQPKPSAQEITSLADSLQLEKEVVRV 350
            ||:|||||||||||||||||||||||||||||.||.||.|.|||:||||:|||||||||||||||
 Frog   259 DSSTGSPTSIDKIAAQGRKRKKRTSIEVSVKGVLETHFLKCPKPAAQEISSLADSLQLEKEVVRV 323

  Fly   351 WFCNRRQKEKRMTPPNTLGGDMMDGMPPGHMHHGGYHPHHDMHGSPMGTHSHSHS 405
            |||||||||||||||                            |.|.....:|||
 Frog   324 WFCNRRQKEKRMTPP----------------------------GDPQQHEVYSHS 350

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vvlNP_001303384.1 POU 212..286 CDD:197673 68/73 (93%)
Homeodomain 305..361 CDD:459649 49/55 (89%)
pou3f4NP_001090728.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 98..130 9/31 (29%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 143..191 14/61 (23%)
POU 185..259 CDD:197673 68/73 (93%)
Homeodomain 278..334 CDD:459649 49/55 (89%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 332..360 12/47 (26%)

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