DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rsph3 and Rsph3

DIOPT Version :9

Sequence 1:NP_648059.1 Gene:Rsph3 / 38751 FlyBaseID:FBgn0052392 Length:659 Species:Drosophila melanogaster
Sequence 2:NP_001101933.2 Gene:Rsph3 / 361476 RGDID:1311306 Length:571 Species:Rattus norvegicus


Alignment Length:561 Identity:173/561 - (30%)
Similarity:259/561 - (46%) Gaps:112/561 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   110 PTRPQQAIVRPIRREA-GIADNRDNHV---------GNPPQRSHFSRSNQEVRSFADELSQKLRF 164
            |.:|      |:||.| |.|..||:..         |||..|:                  .|.|
  Rat    11 PGKP------PLRRCARGPAGGRDHKTEEPFSTDQSGNPAGRN------------------CLAF 51

  Fly   165 LAPEEQNYGGRQSAN-SGAWMDPAM---SQRPRFETTVPQGIFL--PPPHEVQMI----PATMLR 219
            |.|     ||....: :||....::   .:.||...|...|...  |.|.|.:::    |.....
  Rat    52 LPP-----GGTSGCSATGAGATDSLQVPGRNPRVPVTYCWGTLASRPLPREPRLLRSHHPCPWHY 111

  Fly   220 RHVYAY--SSYPMILQGYLTKETGSESKEQKVTATRLNGLRATAAVAAATAAASKSSRNDTQSLA 282
            .||.:|  |..|...:.:|.:                .|..:|..:|:|     .:.||...:.|
  Rat   112 LHVSSYEDSLAPTCFRAHLHR----------------RGRGSTPNMASA-----MTDRNPRAAEA 155

  Fly   283 GGLHITKAQFQQQLQQRRSTSNNNNNSSSNISDKRPVVPPPEP---YKNVMYDRRVIKGSNFG-- 342
            .|.:...::.:....|||...::             ::.|.|.   |.|:|||||||:|:.:.  
  Rat   156 SGTYTYTSRPRAVACQRRRYRDS-------------ILQPVEESMNYGNIMYDRRVIRGNTYALP 207

  Fly   343 NASLVTDVDPFD--KAAELRRRNMLRKRTMQCRNQRNVLGTPPPVKGRKHETIQTEKYLEKLVQR 405
            ...:....||.:  :..:.|||.:.|||..|....|    ||.||:||||..:|||.|||::..|
  Rat   208 TGQVPGQPDPLELQQQQQARRRALARKRAQQQLRPR----TPEPVEGRKHVDVQTELYLEEIADR 268

  Fly   406 PPEFTIDTQTDLFLEKPPTPPFIPAKVGVDVATEIGEGELFHFDAEAQPIIDVLVDACIEQSMLE 470
            ..|..::.|||.||::||||.|||||.|.||||:|.|||||.||.|.:|:::|||...|||::||
  Rat   269 IVEIDMECQTDAFLDRPPTPLFIPAKTGKDVATQILEGELFDFDLEVKPMLEVLVGKTIEQALLE 333

  Fly   471 VAHEMELSSLRRKQEEFLAQREAELAELRRLEAEELRLQAEKERRLRQDAIAKELDAEMQKSVTA 535
            |..|.||::||..|..:...|..||||::|||.:|.|.:.|||||.||.........|..:.::|
  Rat   334 VMEEEELANLRASQYAYEEIRNVELAEVQRLEEQERRHREEKERRKRQQWEIVHKQNETSQKISA 398

  Fly   536 AKLLQGHIASLVPEVLENIEPAS---DAVKKEQLMKSVCPWLSAEVAEEVGHIVDSREILTAIIQ 597
            ....|.::|.|:|.|.:::..:.   |.:::: :.....|||..||.:.:.|.:..|.:|..:|:
  Rat   399 RAFAQRYLADLLPSVFDSLRNSGYFYDPIERD-IEVGFLPWLLNEVEKTMEHSMVGRTVLDMLIR 462

  Fly   598 EIIKQRAEIYAGYKE-----------PESEPSGPDAGVCEE 627
            |::::|...|.. ||           |....:.||..|..|
  Rat   463 EVVERRINDYES-KEAAQPAQRSDDVPNDPNTVPDPSVSLE 502

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rsph3NP_648059.1 Radial_spoke_3 326..604 CDD:283702 115/284 (40%)
Rsph3NP_001101933.2 Radial_spoke_3 189..468 CDD:368744 110/288 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166354526
Domainoid 1 1.000 203 1.000 Domainoid score I2887
eggNOG 1 0.900 - - E1_2CMM4
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H12043
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D406327at33208
OrthoFinder 1 1.000 - - FOG0006135
OrthoInspector 1 1.000 - - oto98202
orthoMCL 1 0.900 - - OOG6_104764
Panther 1 1.100 - - LDO PTHR21648
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X5066
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1312.710

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