DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dikar and AT5G25580

DIOPT Version :9

Sequence 1:NP_001261480.1 Gene:dikar / 38747 FlyBaseID:FBgn0261934 Length:3261 Species:Drosophila melanogaster
Sequence 2:NP_197940.2 Gene:AT5G25580 / 832633 AraportID:AT5G25580 Length:405 Species:Arabidopsis thaliana


Alignment Length:418 Identity:79/418 - (18%)
Similarity:153/418 - (36%) Gaps:101/418 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 WEIPCISHFCSLFSS-AFDLPDIDIEDLESALLSDGTSDEDQVALVPELIVRLLKGCDALQTVAK 78
            ||:..:.:|.::|.. ..:......|::|..|:...|::       .:|.:.||||   :..|.|
plant    52 WELASVLNFFNVFGPLVSEKLKFTAEEIEMGLIESNTTN-------AQLHIALLKG---IPPVNK 106

  Fly    79 EITHSNYQMFLRRFLRQQCR-------------LHQTENHFDTDIDFQSLPVRKRLHILHDLCHF 130
            .:..:|      .::...|:             :|.|.|..:...::|.|....||.||..||..
plant   107 TLDDAN------AWITVLCKKLAPWWPWIAKGEIHITVNKGEEISEYQGLDSINRLKILKALCEL 165

  Fly   131 RLDSVDVQVIL--SNLEAD---SLRVEPLGYDAKNSGYWY----FYGTRLYREDKATGGSASSSS 186
            |:...|.:..:  :..|.|   |||...||.|.|.:.||:    ..|.|||||          .:
plant   166 RVQQDDARSYIQENTKEGDWDSSLRKRKLGGDGKKTSYWFDGNDIQGYRLYRE----------VN 220

  Fly   187 GSGSGGAGASTGGASNSKGIGSNGTVWQVICFTEEDWQNLAAKFKTSTNAKERELFNILDDNFLP 251
            |.....||:.....|           |:......:::|::|.:..:|..:.......:::...:|
plant   221 GISKKNAGSDLSCLS-----------WETEATNLDEFQSVARELSSSKASSLAATGQMIETEAIP 274

  Fly   252 KLPQLFRERERLRRRKL-----LQVRNSSRIRNIAELKARQEEERQRRERENLYQDRQNAHWLAP 311
            .:.:..::|||..::|:     :.|..|..:|.....:..........|.:.:..|       |.
plant   275 VVEKYHKKRERAIKKKMKEEMVVNVNFSRPLRTTRSCRNHMPATYTFDEYDKMISD-------AV 332

  Fly   312 PQQQQQQQQQQQQQQQQSQQRTRRRSQSTSTASGISTYASSLRRTTTTNSSEFLCHRETFCLSPE 376
            .:.:.....:.:.:.|||..                  ..|..::|...::|.           .
plant   333 EETEDTDGDEVEGRDQQSAS------------------LDSNDKSTEVEAAEI-----------H 368

  Fly   377 NDEDDDDDDEALDAEQQSDQPEQQRQQE 404
            ||:|.:::....|||.:.:...:.|.::
plant   369 NDDDKENEISKEDAEPKEEFGAKNRLRQ 396

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dikarNP_001261480.1 WHIM1 100..148 CDD:292246 15/52 (29%)
Bromo_gcn5_like 892..991 CDD:99941
AT5G25580NP_197940.2 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR14296
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

Return to query results.
Submit another query.