DRSC/TRiP Functional Genomics Resources

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Protein Alignment dikar and pbrm1

DIOPT Version :9

Sequence 1:NP_001261480.1 Gene:dikar / 38747 FlyBaseID:FBgn0261934 Length:3261 Species:Drosophila melanogaster
Sequence 2:XP_009304062.1 Gene:pbrm1 / 565366 ZFINID:ZDB-GENE-080926-4 Length:1627 Species:Danio rerio


Alignment Length:1885 Identity:333/1885 - (17%)
Similarity:560/1885 - (29%) Gaps:718/1885 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   832 SNKHKTKSHHSLAHNNNNNNSPTTNPTSTSLLHPVTTNNNSTYNSSNHANILSFTETEEVLQIGM 896
            |.:.:..|..|.....:..:|.:|:.:|||            ......|||    .|.:.:.: .
Zfish     4 SKRRRATSPSSSVSGGDFEDSQSTSISSTS------------RKRRRIANI----PTVDPIAV-C 51

  Fly   897 HKVLVYVKNHRD------AWPFVDPVEEDIAPRYYSIIRRPMDLLKMEDKLDSGEYHKFSEFRND 955
            |::...:::::|      ...|:...:....|.||.::.:|:|::|::.||...||....:..:|
Zfish    52 HELYNTIRDYKDDQGRMLCELFIRAPKRRNQPDYYDVVSQPIDMMKIQQKLKMEEYDDVEQLTSD 116

  Fly   956 FRLIVNNCRLYNGHNNEYTEMVNNLQDAFEKATKKYF----DNLSDDEDDDP------------- 1003
            |:|:.:|.:.|.............|.|.:.: ||..|    |...||:||||             
Zfish   117 FQLLFSNAKTYYKPETPEYRAACKLWDLYIR-TKNEFVQRGDYDEDDDDDDPQENLGGATEEESM 180

  Fly  1004 ---------------------------------NLSYP--------------------------- 1008
                                             .:.||                           
Zfish   181 SSLKEVLGMLLDAVLTYTEHGRLISELFQRLPSKMQYPDYYAIIKEPIDLKSIAHRIQMCYYKSV 245

  Fly  1009 ---AADSKM-------------NVFRE-----KYFSKKAKEETEKDAPGRPAV------------ 1040
               |.|..:             .||::     |.|::| |.|.|...|.:.::            
Zfish   246 NHMAKDIDLLVKNAKTYNEPGSQVFKDANTIKKVFAQK-KLELEHSEPIKCSIRIRNRRFAHGDR 309

  Fly  1041 -----------SSAEED--------LSEIEAEAPQ---------------KAQKRKRKEKDK--- 1068
                       |.:|||        ..|:|:||..               :|.:..|..:.:   
Zfish   310 LSCITTALQYGSESEEDAILTGSVHYDEVESEAESIHSSMDVSNPIFQMYEAVRGVRNSQGQLLA 374

  Fly  1069 ----------------------------RRKKKTKSKADVETDDEDMEAEREPTPPPPPPTSK-- 1103
                                        |.|.|......||..|.|:....|.......|:|:  
Zfish   375 EPFFQLPSRKDYPDYFQQISHPVSLQQIRSKMKNNEYESVEQIDTDLNRMFENAKRYNVPSSQIY 439

  Fly  1104 ----KSKTSKTGKEKEKDKEKEKDKDKEKDKETSSFKRGRKTKSDKSASKSSKKTKKGAKKSSAD 1164
                |.:.....|.||..:..::|.|   .:.:|:...|..||. ||..|::||.:..|..:   
Zfish   440 KRVLKLQHILQMKRKELTRRDDEDGD---SRLSSTLSDGGSTKR-KSHKKNTKKNRMKALLA--- 497

  Fly  1165 SDPESDPSDSRESEDYSDDDHISLAKTKS-----------LVKPTARTIAAQKKKSVPAESKVKM 1218
                                  ::|:|:.           :|||:        ||..|...|:.:
Zfish   498 ----------------------AVAETREMGTGRRLCDLFMVKPS--------KKDYPDYYKIIL 532

  Fly  1219 PTPVKRQVKGKGKGGRKAKDDSLDSDQ------------------SDVNVKKQLPPTAAAALAES 1265
            .....|.::...:..:...:||:..|.                  :|.|:.:::       |.|.
Zfish   533 EPMDMRIIEHNIRSDKYPNEDSMMEDMKLMFRNARHYNEEGSRVYNDANILEKI-------LREK 590

  Fly  1266 AAELEEDPDDPPPDEDE---DEDSSRSRSMSPFKVDLHKKYSKSALNDDLSELLTTVKKVPTAET 1327
            ..||     .||||:||   .:...|...:||.|    .|| .:.|...|:||...||.......
Zfish   591 RKEL-----GPPPDDDEIVSPKLKIRKSGISPKK----SKY-LTPLQQKLNELYEAVKNYTDKRG 645

  Fly  1328 TKLSARHQDEADEERSSRESDGDFKSLSNSRGSSEERPPVAKKGKKAESSKKEKEKKGRDKDRDR 1392
            .:||.                 .|..|.    |..|.|......||....:|.|.....:|.:|.
Zfish   646 RRLST-----------------IFLRLP----SRAELPDYYVAIKKPIDMEKIKSHMLANKYQDV 689

  Fly  1393 DK----------------------EKD-----KDKSRSAKDKKSKDESPVLVAAAEAAAVVQAEL 1430
            |.                      .||     |....:.:|.:..|::.|    .:.|.::| ||
Zfish   690 DALVEDLVLMFNNACTYNEPESLIYKDALVLHKVLLETRRDLEGGDDAHV----PDVARLIQ-EL 749

  Fly  1431 --DMLLPFMDKYDVIKYRRSRAAFSGSSASNSLA--PSEDSKSA--------ITKSNREN---RK 1480
              ::.:..:...|          ..|...|:|||  |:.|...:        |.::|.:.   |:
Zfish   750 VRNLFVSVLGHQD----------DEGRCYSDSLAEIPAVDPNCSDKTPLNFEIIRANVDKGRYRR 804

  Fly  1481 ASAKREKSPDAVENKRGRKSKDQKRSKESDKAEK-----SDKASK----------ADTEKHSEKS 1530
            ....:::..:.:|..|.....|.:..::|.:.::     .|:..|          :.|.||....
Zfish   805 LDVFQDQMFEVLEKARRLHRTDSEIFEDSVELQQFFIRIRDELCKNGEILLTPALSYTIKHLHSD 869

  Fly  1531 KKKEEPPKVVEKAQREKSPAPVSALETIKEPPAPTPIATSASGKVKEGPAKKEPKKRPDKQMPPP 1595
                     |||.::||.|         ||              .:|...|:|.:|         
Zfish   870 ---------VEKEKKEKLP---------KE--------------YEEDKLKREEEK--------- 893

  Fly  1596 PKPADKSSEKGSG------KKSSSKKAAQKAGQPQTNNNTNLEALDVETEQTLKDINR-WLEHTP 1653
             |.|:||.:...|      :::.|:..:.|.......:...:|..:...:..:..|.| |.:   
Zfish   894 -KEAEKSEDTAGGGWQGALQRNYSQDCSFKDNMYHVGDYVYVEPTEPNLQPHIVCIERLWQD--- 954

  Fly  1654 RFTEFSSASNSPSRYNLLDDFDSGIGSKLDAADFRRPVALAAPKAELVPTKLAEALNELVSEPKE 1718
                                 |:| .:.|....|.||    .....|...|..|         ||
Zfish   955 ---------------------DAG-ENWLYGCWFYRP----NETFHLATRKFLE---------KE 984

  Fly  1719 AVSKSESESVAPTPSSVSSSC---------GTPPHSMHSGNSIGSTSATAASSSNCSNNSMPTPL 1774
             |.||:..:..|. |.:...|         ...|.|....:.....|..:|.:.:.....|.|..
Zfish   985 -VFKSDYYNKIPV-SKILGKCVVMFVKEYFKLQPDSFRPEDVFVCESRYSAKTKSFKKIKMWTMP 1047

  Fly  1775 PVAVTPTPTPAPPPLLPIPK---PKEPSTTQLILNPPPPPHIKQQ-------LAKEAKRKSLKEK 1829
            ..:|...|...|.|::.:..   ||:.|        ..||.:.:.       :.||.:..:|:..
Zfish  1048 LSSVKFVPREVPLPVVRVASMFAPKQES--------EKPPEVTEDDKALPSVIDKEKEDITLEVN 1104

  Fly  1830 QAAQAAQAQQVKAKANVMRTIDRLQPGKAKGNLLQNVVAVKS--TEEGGDSHAG---VNP----- 1884
            ......|..:.....|:...:......::.|.:...|..::.  ..:|.....|   ::|     
Zfish  1105 NGEPGCQYYEQLCYNNIWLKVGDCVYIRSHGLVRNRVGRIEKMWVRDGAAYFFGPIFIHPEETEH 1169

  Fly  1885 VTTKVKELKNALITETCEGAPKLSLG---TVLKTQDF---------------------------- 1918
            ..||:...|...::...|..|...:|   ||...:||                            
Zfish  1170 EPTKMFYKKEVFLSNLEESCPMTCIGGKCTVSSFKDFLSCRPTEMPEEDVLLCESRYIESEKQMK 1234

  Fly  1919 ----------------------------------SLGKSLEEMSGK----KDANEDDRPNEEASP 1945
                                              .|.|.:||:..|    .|...||..:::...
Zfish  1235 KFKGLKRFSLSAKVVEDEIYYFRKLIVPQKEPSPLLEKKIEELEAKFADMTDEELDDLGDDDGDG 1299

  Fly  1946 KNSSPPTTPNTEAPKPFEALHELSKRG--KSSEPSKSEASQKEKPNLSAW----------LKA-- 1996
            .::.......|:.....:.||...::.  ||.:....:...|.|.|:|.:          :||  
Zfish  1300 SDAHCMPQLQTQLSGDMDMLHYAPQQSVPKSIKGLSKKEGAKRKINMSGYILFSSEMRAVIKAQH 1364

  Fly  1997 ----FG-----------GPKVSKKSEDEEKQQTPVQDLQGD--SKVAPPAHSPAG---DNFSLPT 2041
                ||           ..:.:||:|.||:.....:..:.|  .:.:|.|.:|||   ....|||
Zfish  1365 PDFSFGELSRLVGTEWRNLEATKKAEYEERAAKVAEQQERDRAHQGSPRAGTPAGLLMGVVPLPT 1429

  Fly  2042 VMRQRKPSTGSTNSERSSFSQDPDSPRIAIDERYGSYAAGSYTSPIGASPIGASPIMVSPKPNDD 2106
            .| ...|..|                           ..||:..|:.... |...|.:.|.|   
Zfish  1430 PM-GLVPMAG---------------------------MLGSFRPPMFTCQ-GPGMINMPPHP--- 1462

  Fly  2107 MGKPASPYPLNGAIKVGFYQDTTTKSSPDKSCSPREMNSPYPQYSQHIYSSASSPNVSTPDMSGT 2171
            ||.||.|                             :|.|:           ..|.:....|:|.
Zfish  1463 MGLPALP-----------------------------LNFPW-----------GLPGMPFHGMNGM 1487

  Fly  2172 SPYGGGNSYNP------SGSEASKTPAYSSTSPLPIYDQYKQPRSQESDYNSSMSPSTPNPHSPY 2230
            :|...|::|..      ||.:.        ..|.|...|..||..|:        ||||...:|.
Zfish  1488 APGSTGSAYGTQMGGMNSGQQV--------PPPYPGQGQVGQPAHQQ--------PSTPMFVAPP 1536

  Fly  2231 QQPQ----SSPYTTPQQSQSTHPSPYHNQSPYHQQQHSPYHPPAAQQQQQSSQPSH---SPAAHQ 2288
            .:||    |..|....:..|...:   ..|.:.|...:........::|:|..|||   |..||:
Zfish  1537 PKPQRLLHSEAYLKYIEGLSAEST---TVSKWDQTLSARRKDVRLTKEQESRLPSHWLKSKGAHK 1598

  Fly  2289  2288
            Zfish  1599  1598

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dikarNP_001261480.1 WHIM1 100..148 CDD:292246
Bromo_gcn5_like 892..991 CDD:99941 22/104 (21%)
pbrm1XP_009304062.1 Bromo_polybromo_I 45..156 CDD:99954 23/112 (21%)
Bromo_polybromo_II 183..284 CDD:99948 9/101 (9%)
Bromo_polybromo_III 352..453 CDD:99951 13/100 (13%)
Bromo_polybromo_IV 488..591 CDD:99949 20/142 (14%)
Bromo_polybromo_V 626..730 CDD:99946 23/124 (19%)
Bromo_polybromo_VI 745..850 CDD:99956 19/115 (17%)
BAH_polybromo 923..1042 CDD:240068 25/158 (16%)
BAH_polybromo 1120..1238 CDD:240068 16/117 (14%)
HMG 1341..1408 CDD:197700 14/66 (21%)
Forkhead_N 1415..1541 CDD:254796 43/213 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5076
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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