DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dikar and pbrm1l

DIOPT Version :9

Sequence 1:NP_001261480.1 Gene:dikar / 38747 FlyBaseID:FBgn0261934 Length:3261 Species:Drosophila melanogaster
Sequence 2:XP_005168819.1 Gene:pbrm1l / 445141 ZFINID:ZDB-GENE-010501-3 Length:1657 Species:Danio rerio


Alignment Length:2056 Identity:349/2056 - (16%)
Similarity:605/2056 - (29%) Gaps:796/2056 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   832 SNKHKTKSHHSLAHNNNNNNSPTTNPTSTSLLHPVTTNNNSTYNSSNHANILSFTETEEVLQIGM 896
            |.:.:..|..|.|...:.:::.::.|.|          ......:||         ...|.||.:
Zfish     3 SKRRRATSPSSSASGGDFDDASSSTPVS----------GWKRRRASN---------APSVDQIAV 48

  Fly   897 -HKVLVYVKNHRD------AWPFVDPVEEDIAPRYYSIIRRPMDLLKMEDKLDSGEYHKFSEFRN 954
             |::...|::::|      ...||...:....|.||.|:.:|:|::|::.||.:.||....:|..
Zfish    49 CHELYNTVRDYKDDQGRQICELFVRAPKRRNQPDYYEIVSQPIDMMKIQQKLRAEEYQDVEQFSA 113

  Fly   955 DFRLIVNNCRLYNGHNNEYTEMVNNLQDAFEKATKKYFDNLSDDEDDDPNLSYPAADSKMNVFRE 1019
            ||.|::||                         ||.|:.  :|..:      :.||...:|||  
Zfish   114 DFHLLINN-------------------------TKAYYQ--ADSAE------HRAASKLLNVF-- 143

  Fly  1020 KYFSKKAKEETEKDAPGRPAVSSAEEDLSEIEAEAPQKAQKRKRKEKDKRRKKKTKSKADVETDD 1084
                ..||.|..:...|..|     ||..|.|                           |.|..:
Zfish   144 ----LSAKNELLQGGDGEEA-----EDDEESE---------------------------DAENTN 172

  Fly  1085 EDMEAEREPTPPPPPPTSKK-----------SKTSKTGKEKEKDKEKEKDKDKEKD-----KETS 1133
            ..||.||       ||:..|           |.|..:|:...:..:|...|....|     ||..
Zfish   173 ASMEEER-------PPSYLKAILEQLLEAIASCTDSSGRLVSELFQKLPSKLHYPDYYAVIKEPI 230

  Fly  1134 SFK------RGRKTKSDKSASKSSKKTKKGAKKSSADSDPESDPSDSRESEDYSDDDHISLAKTK 1192
            ..:      :|...||..:.:|......|.||       ..::|.    |:.:.|          
Zfish   231 DLRAVAQKIQGGHYKSISAMAKDIDLLVKNAK-------TYNEPG----SQVFKD---------- 274

  Fly  1193 SLVKPTARTIAAQKKKSVPAESKVKM----PTPVKRQVKGKGKGGRKAKDDSLDSDQSDVNVKKQ 1253
                  |.||     |.|.|:.|:::    ||....:::.:    |.|:.|.|            
Zfish   275 ------ANTI-----KKVFAQRKIEIEQAEPTKTSLRIRNR----RSAQGDRL------------ 312

  Fly  1254 LPPTAAAALAESAAELEEDPDDPPPDEDEDEDSSRSRSMSPFKVDLHKKYSKSALN--DDLSELL 1316
                :|..:|..|.            .:.||||..:.::   :.|..:..:...|:  |.:..|.
Zfish   313 ----SAITMALQAG------------SESDEDSILTGTV---RYDTGETEADCGLSAGDPILLLY 358

  Fly  1317 TTVKKVPTAETTKLSA--------------RHQDE---ADEERSSRESDGDFKSL---------- 1354
            ..|:...:.:...||.              .||.:   :.::...:..:||::::          
Zfish   359 QAVRGARSVQGLLLSEPFLQLPSRREYPDYYHQIKNPISLQQIREKMKNGDYEAVEQIEADLSVM 423

  Fly  1355 -SNSRGSSEERPPVAKKGKKAESSKKEKEKKGRDKDR--------DRDKEKDKDKSRSAKDKKSK 1410
             .|:|..:.....:.|:.::.:...::|:::.||.|.        |....|.|...:|||..:.|
Zfish   424 FENARRYNMPNSTIYKRAQRLQLIMQQKKREFRDDDEGDVSTANSDVGSSKKKSHKKSAKKNRMK 488

  Fly  1411 DESPVLVAAAEAAAVVQ-AELDMLLP----FMDKYDVIKYRRSRAAFSGSSASNSLAPSEDSKSA 1470
            ....||..|.|..:..: .:|.|:.|    :.|.|.:|:                          
Zfish   489 MLYAVLTDAREPGSGRRLCDLFMVKPLKKDYPDYYKIIQ-------------------------- 527

  Fly  1471 ITKSNRENRKASAKREKSPDAVENKRGRKSKDQKRSKESDKAEKSDKASKADTEKHSEKSKKKEE 1535
                               |.::.:....:...:|....|...:..|....:...::|:..:...
Zfish   528 -------------------DPMDMRTIENNIRTERYNNEDALMEDMKLMFRNARHYNEEGSQVYN 573

  Fly  1536 PPKVVEKAQREKSPAPVSALETIKEPPAPTPIATSASGKVKEGPAKKEPKKRPDKQMPPPPKPAD 1600
            ...|:||..::|                                         .|::.|.|:..|
Zfish   574 DANVLEKMVKDK-----------------------------------------QKELGPAPEEDD 597

  Fly  1601 KSSEK----GSGKKSSSKKAAQKAGQPQTNNNTNLEALDVETEQTLKDINRWLEHTPRFTEFSSA 1661
            ..|.|    .||...|.|||..:....|...:...||:...|:      ||....:..|....|.
Zfish   598 VGSPKLKLRRSGVAVSPKKARIQTTPLQQKLSELYEAVRNFTD------NRGRRLSTVFLRLPSR 656

  Fly  1662 SNSPSRY-------------------------NLLDDFDSGIGSKLDAADFRRPVALAAPKAELV 1701
            |..|..|                         :|.:||   |....:|..:..|.:|....|.|:
Zfish   657 SELPDYYAAIKRPIDMERIRSYMVQGRYQDVDSLAEDF---ILMFNNACTYNEPESLIYRDALLL 718

  Fly  1702 PTKLAEALNELVSEP----------------KEAV--------------SKSESESVAPTPSSVS 1736
            .....||...:..|.                :|.:              .:..|:|:|..|:...
Zfish   719 HRAFLEARRRIEEEENGDEGGLGGLSVASLVRELIRNLFVSMMGHQDDEGRCYSDSLAEVPAIDP 783

  Fly  1737 SSCGTPP-------HSMHSG-------------------NSIGSTSATAASSS------------ 1763
            ::...||       :::.||                   ..:..|.:.....|            
Zfish   784 ANPDDPPLTLEIIRNNVDSGRYRRLDVFQEHVFEVLEKARRLNRTDSEIFEDSVELQHFFVKIRD 848

  Fly  1764 -NCSNNSMPTPLPVAVTPTPTPAPPPL-LPIPKPKEPSTTQLILNPPPPPHIKQQLAKEAKRKSL 1826
             .|.|..      :.:||..:.....| ..|.:.|.....|.|        .:.||.:|..:|:|
Zfish   849 ELCKNGE------ILLTPALSYTSKHLHSDIDQEKREKLPQEI--------EEDQLKREEDKKAL 899

  Fly  1827 KEKQAA-------------QAAQAQQVKAKANVMRTIDRLQPGKAKGNLLQNVVAVK---STEEG 1875
            .|...|             |::.:|....:.|.....|.:....|:.||..:||.::   ..|.|
Zfish   900 PEGDKAEGPAEGGQWPSGSQSSYSQDCSFENNTYSIGDYVYVQPAEANLQPHVVCIEKLWKDESG 964

  Fly  1876 GDSHAG---VNPVTTKVKELKNALITETCEGAPKLSLGTVLKTQDFSLGKSLEEMSGK------K 1931
            .....|   ..|             .||...|.:..|...:...|::......::.||      |
Zfish   965 QQWMYGCWFYRP-------------EETFHLATRKFLEKEIFKSDYNNRVPFSKILGKCFVLFVK 1016

  Fly  1932 D----ANEDDRPNE------------EASPKN---SSPPTTPN---TEAPKPFEALHEL--SKRG 1972
            |    ..|..:|.:            :|..|.   |.||.:..   .|.|.|...:..:  ..:.
Zfish  1017 DYFKLQPEGFKPEDVYVCESRYTVRTKAFKKIKIWSMPPNSVKLLPREVPLPVVRVASMFVGAKD 1081

  Fly  1973 KSSEPSKSEAS---QKEKPNL--------------------SAWLKA------------------ 1996
            |:::....|:.   :||:.::                    ..|||.                  
Zfish  1082 KAADLPDGESGGFIEKEREDVPVEVPNGELGCQYYEQLRYNDMWLKLGDCVYIRSHGLVRPRVGR 1146

  Fly  1997 ------------FGGPKVSKKSEDEE-------KQQTPVQDLQGDSKVAPPAHSPAGDNFSLPTV 2042
                        |.||......|.|.       |::..:..|:              :|..:..|
Zfish  1147 IEKMWLRDGAAFFFGPIFIHPEETEHEPTKMFYKREVFLSSLE--------------ENCPMTCV 1197

  Fly  2043 MRQRKPSTGSTNSERSSF--------SQDPDSPRIAIDERYGSYAAGSYTSPIGASPIGASPIM- 2098
            :|:         ...|||        ::.|:...:..:.||                |.:...| 
Zfish  1198 LRK---------CVVSSFKDFLSCRPTECPEEDVLLFESRY----------------IESEKQMK 1237

  Fly  2099 ---------VSPKPNDD----MGKPASPYPLNGAI----------KVGFYQD------------- 2127
                     :|.|..||    ..||..|..:...:          |....:|             
Zfish  1238 KFKALKRFSLSAKVVDDEIFYFRKPIVPQKVPSPLLDKKIEELEAKFADMEDLDDDMDDLDDDDE 1302

  Fly  2128 ---TTTKSSPDKSCSPREMNSPYPQYSQHIYSSASSPNVSTPDMSGTS-PYGGGNSYNPSG---- 2184
               .|....|.::.:..:|:.||            :|..|||.:.|.| ..|.....|.||    
Zfish  1303 EAAATPSMPPSQASTTSDMDMPY------------TPPQSTPKIKGMSKKEGAKRKINMSGYILF 1355

  Fly  2185 -SEA-----SKTPAYS--STSPLPIYDQYKQPRSQESDYNSSMSPSTPNPHSPYQQPQSSPYTTP 2241
             ||.     ::.|.:|  ..|.|...:......:::::|                :.:::.....
Zfish  1356 SSEVRSLIKARHPDFSFGELSRLVGTEWRNLEATKKAEY----------------EERAAKLVEQ 1404

  Fly  2242 QQSQSTHPSPYHNQSPYHQQQHSPYHPPAAQQQQQSSQPSHSPAAHQQALSPMHSVESPASSAAT 2306
            |:.:..           .||||........|||||:|..:.:|......:.|             
Zfish  1405 QERERV-----------LQQQHQQQQQQQQQQQQQASPRAGTPVGTMMGVVP------------- 1445

  Fly  2307 QPPTPLAQSPAEQQHSPYQQPVLSPYQQPQQQVQPPVV-------PPVQPSAGAQASTALGNNGY 2364
             ||:.:..                     ..|..|||.       ||..|..|.:....:|  |.
Zfish  1446 -PPSAMGM---------------------LNQAMPPVPGMMGNYGPPYMPMQGPEGMMGMG--GT 1486

  Fly  2365 APTHDSYQQLQQQQRSL-----Y----NPATLINPLSTAASSTASITKPNNDWSLNRSLLPPSIT 2420
            .|......||..|...|     |    :|..::..::.:..       |.|.:.:..:...|.  
Zfish  1487 PPHLMGVPQLPSQHYLLPGMAGYPGMPHPGVMVPGMNGSPG-------PGNPYGMQMAGYGPG-- 1542

  Fly  2421 NTVNQAAQQQQQQQQQQAGQLQ---QQPQMQAAQQQLQSTPQQQQQQLQGTPQQQQLQG------ 2476
                      ||......||.|   |||    |.....:.|.:.|:.|......:.::|      
Zfish  1543 ----------QQAPPPYPGQGQPGHQQP----APPIFVAPPPKPQRLLHSEAYLKYIEGLSAESS 1593

  Fly  2477 --SQQQQQQQQQQQQLQTSQQQQQQVLGHQQQHKPKYPTYA 2515
              |:..|..:.|::..:.|::|:..:..|..:.|..:.|.|
Zfish  1594 TVSKWDQSLKAQRKDCRLSREQESHLPTHWLKSKGAHTTMA 1634

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dikarNP_001261480.1 WHIM1 100..148 CDD:292246
Bromo_gcn5_like 892..991 CDD:99941 26/105 (25%)
pbrm1lXP_005168819.1 Bromo_polybromo_I 43..152 CDD:99954 37/147 (25%)
Bromo_polybromo_II 184..286 CDD:99948 25/133 (19%)
Bromo_polybromo_III 352..452 CDD:99951 12/99 (12%)
Bromo_polybromo_IV 485..585 CDD:99949 19/144 (13%)
Bromo_polybromo_V 624..723 CDD:99946 20/107 (19%)
Bromo_polybromo_VI 746..853 CDD:99956 12/106 (11%)
BAH_polybromo 933..1049 CDD:240068 23/128 (18%)
BAH_polybromo 1123..1241 CDD:240068 21/156 (13%)
HMG-box 1346..1408 CDD:238037 11/77 (14%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5076
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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