DRSC/TRiP Functional Genomics Resources

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Protein Alignment dikar and tbrd-2

DIOPT Version :9

Sequence 1:NP_001261480.1 Gene:dikar / 38747 FlyBaseID:FBgn0261934 Length:3261 Species:Drosophila melanogaster
Sequence 2:NP_611401.2 Gene:tbrd-2 / 37207 FlyBaseID:FBgn0034423 Length:674 Species:Drosophila melanogaster


Alignment Length:707 Identity:132/707 - (18%)
Similarity:230/707 - (32%) Gaps:222/707 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   900 LVYVKNH--------RDAWPFVDPVEED--IAPRYYSIIRRPMDLLKMEDKLDSGEYHKFSEFRN 954
            |.|.|.|        :.|..|::||:.:  :.|.||::|.||||:..:..::.:..|...:|...
  Fly    35 LHYFKKHLLDEARKKKYALDFLEPVDTEALMVPTYYTVIHRPMDIGTIVKRVQNNYYKSVNEAIA 99

  Fly   955 DFRLIVNNCRLYNGHNN------------------------------------------------ 971
            ||:.|::||.|:|...:                                                
  Fly   100 DFKQIISNCFLFNRSGDVVYRKGQMLEKFFHKKLRGMPSGPEVPCNRDPKAVGRPRTNAPSSAQT 164

  Fly   972 -----EYTEMVNNLQDAFEKATKKYFDNLSDDEDDDPNLSY--------------------PAAD 1011
                 |..:.:.::.:..:..|:.:|.|..|......:..|                    ||  
  Fly   165 ERKCRELLKKLQSITNQTDAMTRNFFSNKWDSLQKKVDRQYFKSVNEFCLHVDGCFRKYHEPA-- 227

  Fly  1012 SKMNVFREKYFSKKAKEETEKDAPGRPAVSSA--EEDLSEIEAEAPQKAQKRKRKEKDKRRKKKT 1074
               .:..|:.|::.|...|..:  |..::.||  ..||:|:.|.|........:..:.....:..
  Fly   228 ---KILYERVFNQPAAWCTSMN--GNSSLESALNAADLNELLAAAKLTVNSLMQCVQMPGSGEPL 287

  Fly  1075 KSKADVETDDE-------DMEAEREPTPPPPPPTSKKSKTSKTGKEKEKDKEKEKDKD------- 1125
            .:|:.|||..:       .|||.:..:|.|     ..||..|...|:|.|..:.:.|.       
  Fly   288 TAKSLVETFCDTLNKMINKMEAGQRNSPNP-----SSSKRQKMSPEQETDLVQGEFKPAMELLSG 347

  Fly  1126 -----------KEKDKETSSFKRGRKTKSDKSAS-KSSKKTKKGAKKSSADSDPESDPSDSRESE 1178
                       :..|.|...... |.|.:|:.|: |...|....|.|.......:.:...|....
  Fly   348 NEIDNLMAVSIESSDDEAIDASM-RITDADRCATQKLFAKLPTNAMKEIIHMVQQIEGFSSENCG 411

  Fly  1179 DYSDDDHISLAKTKSLVKPTARTIAAQKKKSVPAESKVKMPTPVKRQVKGKGKGGRKAKDDSLDS 1243
            |.|.|       .|.|...|...:.:...|:..|.||:|:    |.....:.:|.::|....|  
  Fly   412 DLSFD-------VKGLATDTMIMMKSAVTKATRAHSKLKL----KDMQPSEKEGLQRALQSQL-- 463

  Fly  1244 DQSDVNVKKQLPPTAAAALAESAAELEEDPDDPPPDEDEDEDSSRSRSMSPFK------VDLHKK 1302
                ||:.:.|                            :::..|...:..|:      .::.:|
  Fly   464 ----VNITRML----------------------------NKNRRRCGPLINFRNKNNTANNVVRK 496

  Fly  1303 YSKSALNDDLSELLTTVKK----VPTAETTKLSARHQDEADEERS-----SRESDGDFKSLSNSR 1358
            .:.:.|...|..|...|..    ....||..||    |.:|::.|     |.......::|..:.
  Fly   497 RATAPLTAKLKPLQANVMAPQLGAGVVETHNLS----DTSDDDVSAPVKLSAIGGTPMRNLPINS 557

  Fly  1359 GSSEERP-------PVAKKGKKAESSKKEKEKK------GRDKDRDRDKEKDKDKSRSAKDKKSK 1410
            ...:.:|       |...:.:.:.||..|.|.|      .|.:.|.....|.:.:|.|:...:|.
  Fly   558 NPLQMQPIRSPPKLPHVVELQMSSSSSSESEMKSKSGRLSRSRSRSMSDTKLRPRSNSSASSRSN 622

  Fly  1411 DESPVLVAAAEAAAVVQAELDMLLPFMDKYDVIKYRRSRAAFSGSSASNSLAPSEDS 1467
            ..|.....|..::.                     .|||::.|.||:||:.:.|.||
  Fly   623 SSSSSGSNAGSSSG---------------------SRSRSSSSSSSSSNNSSESNDS 658

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dikarNP_001261480.1 WHIM1 100..148 CDD:292246
Bromo_gcn5_like 892..991 CDD:99941 27/153 (18%)
tbrd-2NP_611401.2 Bromo_gcn5_like 34..136 CDD:99941 25/100 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5076
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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