DRSC/TRiP Functional Genomics Resources

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Protein Alignment dikar and Brd8

DIOPT Version :9

Sequence 1:NP_001261480.1 Gene:dikar / 38747 FlyBaseID:FBgn0261934 Length:3261 Species:Drosophila melanogaster
Sequence 2:XP_008770251.2 Gene:Brd8 / 291691 RGDID:1307003 Length:1206 Species:Rattus norvegicus


Alignment Length:774 Identity:162/774 - (20%)
Similarity:269/774 - (34%) Gaps:239/774 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   563 QLLDTNSAAIAVATSIAD-----LSLPSPVAHESETEQDEQVDQPA-----------VVEAQPPA 611
            ::||.  ||:..|.|..:     .|||.|..|..:.|:|:.|..||           ..|::...
  Rat   505 EVLDV--AAVEAALSFCEENDDPQSLPGPWEHPIQQERDKPVPLPAPEMTVKQERLDFEESETKG 567

  Fly   612 ---LTSAMAPAANVKLPGRQTNNSLSS---LTGNIFIPS-GSAQQQQQQSQEPPSSSSSSQSGTT 669
               |.........:|:...:....:|.   :.|...:|| ...:.:.|...|.|.||::.:.|  
  Rat   568 IHELVDIRDSGVEIKVEPTEPEPGMSGAEIVAGVGPVPSLEPPELRSQDLDEEPRSSAAGEMG-- 630

  Fly   670 TTASTVRSKKQKAVLNSSGSSSTSKMADKADRNLS--KTETTGKSKKSAA-GSSASSSSSKAE-- 729
                           .:.|||...:     :|.|.  |||.:.:|..|.: ||:......:||  
  Rat   631 ---------------EADGSSGKGE-----ERPLPAVKTEASPESMLSPSHGSNPIEDPLEAETQ 675

  Fly   730 ---RISGAYSDKSGDDHVNSSNRSTTNNNSSLNNNNNHKHAPHHSHNNNNNSHSTTTSATTTATT 791
               .:|.:..::||           |...|.:      |.||......:..|.    :|:.....
  Rat   676 HKFEMSDSLKEESG-----------TIFGSQI------KDAPGEEEEEDGVSE----AASLEEPK 719

  Fly   792 TTSQGYHYNSNLNHNQNHQNSHSHHTHHHHHHHHHTTNNHSNKHKTKSHHSLAHNNNNNNSPTTN 856
            ...||..|.|.:::......|....:.|               :.|...|:|      .:|..::
  Rat   720 EEDQGEGYLSEMDNEPPVSESDDGFSIH---------------NATLQSHTL------GDSIPSS 763

  Fly   857 PTSTSLLHPVTTNNNSTYNSSNHANILSFTETEEVLQIG--MHKVLVYV----KNHRDAWPFVDP 915
            |.|:..                  ::.|  |.:|.:|..  ..|.::.|    .|||.|..|:.|
  Rat   764 PASSQF------------------SVCS--EDQEAIQAQKIWKKAIMLVWRAAANHRYANVFLQP 808

  Fly   916 VEEDIAPRYYSIIRRPMDLLKMEDKLDSGEYHKFSEFRNDFRLIVNNCRLYNGHNNEYTEMVNNL 980
            |.:||||.|:||::|||||..::..:::|.....:||:.|..|:..|..:||..:::...|...:
  Rat   809 VTDDIAPGYHSIVQRPMDLSTIKKNIENGLIRSTAEFQRDIMLMFQNAVMYNSSDHDVYHMAVEM 873

  Fly   981 Q-DAFEK-----ATKKYFDNLSDDEDDDPNLSYPAADSKMNVFREKYFSKKAKEETEKDA--PGR 1037
            | |..|:     ||:.....           |.....:|....|:   |.:.::.:|||:  .|.
  Rat   874 QRDVLEQIQQFLATQLIMQT-----------SESGISAKSLRGRD---STRKQDASEKDSVPMGS 924

  Fly  1038 PA-------------VSSAEE--DLSEIEAEAPQKAQKRKRKEKDKRRKKKTKSKADVETDD-ED 1086
            ||             :.|.::  |.||:..:...................|....||||.|: |:
  Rat   925 PAFLLSLFVGCEWVWLDSGQDYPDDSELSNDCRSLFSSWDSSLDLDVGSWKDSEDADVEADELEE 989

  Fly  1087 MEAEREPTPPPPPPTSKKSKTSKTGKEKEKDKEKEKDKDKEKDKETSSFKRGRKTKSDKSASKSS 1151
            ...|||                  ..|...|..:..:..:|:|.:.:..    ...|::.|.:.|
  Rat   990 SSPERE------------------SSELLVDDMESGEPQEEQDTQQNLL----HLLSEEEALQDS 1032

  Fly  1152 KKTKKGAKKSSADSDPESDP-----------------------SDSRESEDYSD----DDHISLA 1189
            |:|.:|...:   ||.|..|                       |:|.:..|.|.    .||....
  Rat  1033 KETGQGEGDA---SDGEDTPPLGEGRDGVRVQEAPLVNILYNCSNSSQLSDLSQGDPTQDHFLFK 1094

  Fly  1190 KT--------------KSLVKPTARTIAAQKKKSVPA-ESKVKMP---TPVKRQV-KGK 1229
            ||              ...:||.:       :|..|. :..||.|   |.:||.: ||:
  Rat  1095 KTLLQVWKMIASHRFSSPFLKPVS-------EKQAPGYKDVVKRPMDLTTLKRNLSKGR 1146

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dikarNP_001261480.1 WHIM1 100..148 CDD:292246
Bromo_gcn5_like 892..991 CDD:99941 36/110 (33%)
Brd8XP_008770251.2 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5076
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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