DRSC/TRiP Functional Genomics Resources

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Protein Alignment dikar and brd8a

DIOPT Version :9

Sequence 1:NP_001261480.1 Gene:dikar / 38747 FlyBaseID:FBgn0261934 Length:3261 Species:Drosophila melanogaster
Sequence 2:XP_017208471.1 Gene:brd8a / 100003763 ZFINID:ZDB-GENE-091113-54 Length:820 Species:Danio rerio


Alignment Length:902 Identity:172/902 - (19%)
Similarity:291/902 - (32%) Gaps:345/902 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   222 DW---QNLAAKFK---TSTNAKER------ELFNILDDNFLPKLPQLFRERERLRRRKLLQVRNS 274
            ||   ::.|:::.   .:|.|.:|      |:...::|..:.:|     ..||:...|.|     
Zfish    56 DWFSQKHCASQYSELLETTEAPKRKRGEKGEVVETVEDVIVRRL-----TAERIEELKRL----- 110

  Fly   275 SRIRNIAELKARQEEERQRRERENLYQ-----DRQNAHWLAPPQQQQQQQQQQQ---------QQ 325
                    :|..||:.|:.:....|.|     .:....|....:.::|::::.:         .|
Zfish   111 --------IKDTQEKHRKLKRESELIQAGHLDSKLEELWEEIVRSRKQEEEEAEVKRKATDAAYQ 167

  Fly   326 QQQSQQRTRRRSQSTSTASGISTYASSLRRTTTTNSSEFLCHRETFCLSPENDEDDDDDDEA--- 387
            .:|:.:.|.:|..|.:..|.....:.||         :|          |..|..:|....|   
Zfish   168 ARQAVKNTPKRVPSVTVRSPSGACSPSL---------DF----------PIGDSSEDPGSTAAGP 213

  Fly   388 --------------LDAEQQS--DQPEQQR--QQEEQPPEEEQRQEPEELLAVSATDDDFRSPEA 434
                          ::|...|  |:..|::  .|:..||       |..||              
Zfish   214 TVFVPLTELPGPGVVEASLGSLLDESTQKKLLGQKITPP-------PSPLL-------------- 257

  Fly   435 PKSQTPAELKSKSSHHHHHHHHKKKKSSKKQKKRHHRDKGRERDREHHHHHRRRHKHASEADEGE 499
                  :||..|.|         ...:|.:.                             |.|||
Zfish   258 ------SELLKKGS---------LLPTSPRL-----------------------------AVEGE 278

  Fly   500 DDNNNHNSNSNSNSNTNSISSNNSVQPKRRRSGQQQQHHQQAETTEPSTS-LSPEDKENFCRQLQ 563
            ..:|....:..:...|:|:.::                  ||.|..|:.| |.......|..||.
Zfish   279 TPSNQLAGSHENQMMTSSLPAS------------------QAATGAPTLSRLLEAGPAQFPSQLS 325

  Fly   564 LLDTNSAAIAVATSIADLSLP---------------------------SPVAHESETEQ------ 595
            .|.|..:|.:.|||..|:..|                           |.:|.|.:.|.      
Zfish   326 SLATADSAPSAATSAVDVVAPLSTGEGAAGASVDNKEAVLGEEDLVTVSYMAEELDLETVGDIIA 390

  Fly   596 --DEQVDQPAVVEAQPPALTSAMAPAANVKLPGRQTNNSLSSLTG----NIFIP------SGSAQ 648
              :|:.|:.|      .||.:|:..|| :.|    ..::..||||    |.|.|      |.||.
Zfish   391 IIEEKGDENA------EALDAAVVEAA-LSL----CEDTGHSLTGSWEPNPFRPICPEPSSTSAD 444

  Fly   649 ---------QQQQQSQEPPSSSSSSQSGTTTTASTVRSKKQKAV----LNSSGSSSTSKMADKAD 700
                     :.:::..:...|||......:|.:|||.|..|...    |||             :
Zfish   445 LDPHSLNLLEGKREGPDACGSSSGCAQMYSTPSSTVPSVPQDPTPIVGLNS-------------E 496

  Fly   701 RNLSKTETTGKSKKSAAGSSASSSSSKAERISGAYSD-KSGDDHVNSSNRSTTNNNSSLNNNNNH 764
            .:..:.|.|.:::.....|..|...|:||..:.:.|| :|.||.|                    
Zfish   497 PDTPRPEHTDQAQDEQPESLHSLIKSEAEEWTRSQSDTRSVDDPV-------------------- 541

  Fly   765 KHAPHHSHNNNNNSHSTTTSATTTATTTTSQGYH----------------YNSNLNHN------- 806
              ...||...........:.|...:.:....|..                |.|..:.:       
Zfish   542 --IKQHSKEVKEEEEEAASDAEEGSVSEMKSGLEGDGAEDCGGEEDGDAVYLSEADGDTELDPPA 604

  Fly   807 QNHQNSHSHHTHHHHHHHHHTTNNHSNKHKTKSHHSLAHNNNNNNSPTTNPTSTSLLHPVTTNNN 871
            ...::.:|.||                                        .|:|:....|.::.
Zfish   605 SESEDGYSMHT----------------------------------------ASSSIQLHTTADSI 629

  Fly   872 STYNSSNHANILSFTETEEVLQIG--MHKVLVYV----KNHRDAWPFVDPVEEDIAPRYYSIIRR 930
            .:..:|:..:|.|  |.:|.:|..  ..|.::.|    .|||.|..|:.||.:||||.|:||:.|
Zfish   630 PSSPASSQFSICS--EDQEAIQAQKIWKKAIMLVWRAAANHRYANVFLQPVTDDIAPGYHSIVHR 692

  Fly   931 PMDLLKMEDKLDSGEYHKFSEFRNDFRLIVNNCRLYNGHNNEYTEMVNNLQ-DAFEK 986
            ||||..::..:::|.....:||:.|..|:..|..:||..:::...|...:| |..|:
Zfish   693 PMDLSTIKKNIENGLIRTTAEFQRDIMLMFQNAVMYNSSDHDVFHMAVEMQRDVLEQ 749

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dikarNP_001261480.1 WHIM1 100..148 CDD:292246
Bromo_gcn5_like 892..991 CDD:99941 34/102 (33%)
brd8aXP_017208471.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5076
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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