DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GluRIA and GLR3.4

DIOPT Version :9

Sequence 1:NP_476855.1 Gene:GluRIA / 38742 FlyBaseID:FBgn0004619 Length:991 Species:Drosophila melanogaster
Sequence 2:NP_001030971.1 Gene:GLR3.4 / 839268 AraportID:AT1G05200 Length:959 Species:Arabidopsis thaliana


Alignment Length:1053 Identity:226/1053 - (21%)
Similarity:381/1053 - (36%) Gaps:286/1053 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 ICASSIFW---------PEFSSAQQQQQTVSL------TEKIPLGAIF--------------EQG 49
            :|. |:.|         ..||.......:.||      ...:.:||:|              :..
plant    21 LCV-SVLWVVPKECACRSNFSRNSSSSSSSSLRPLRQRPSSVNVGALFTYDSFIGRAAKPAVKAA 84

  Fly    50 TDDV---QSAFKYAMLN---HNLNVSSRRFELQAYVDVINTADAFKLSRLICNQFSRGVYSMLGA 108
            .|||   ||..|...||   .:.|.|.          .|.|..|.:|..          ..::.|
plant    85 MDDVNADQSVLKGIKLNIIFQDSNCSG----------FIGTMGALQLME----------NKVVAA 129

  Fly   109 VSPDSFDTLH--SY-SNTFQMPFVTPWFPEKVLAPSSGLLDFAISMRP---DYHQ--AIIDTIQY 165
            :.|.|....|  || :|...:|.::....:    |:...|.|...:|.   ||.|  ||.|.:.|
plant   130 IGPQSSGIAHMISYVANELHVPLLSFGATD----PTLSSLQFPYFLRTTQNDYFQMHAIADFLSY 190

  Fly   166 YGWQSIIYLY----DSHDGLLRLQQIYQE----------LKPGNETFRVQMVKRIANVTMAIEFL 216
            .||:.:|.::    ...:|:..|..:..:          :.||.::..::.:....|:       
plant   191 SGWRQVIAIFVDDECGRNGISVLGDVLAKKRSRISYKAAITPGADSSSIRDLLVSVNL------- 248

  Fly   217 HTLEDLGRFSKKRIVLDCPAEMAKEIIVQHVR-DIKLG----RRTYHYLLSGLV----------M 266
                                 |...:.|.||. |..|.    .::...:.||.|          |
plant   249 ---------------------MESRVFVVHVNPDSGLNVFSVAKSLGMMASGYVWIATDWLPTAM 292

  Fly   267 DN--HWPSDVVEF--GAINITGFRIVDSNRRAVRDFHDSRKRLEPSGQSQSQNAGGPNSLPAISA 327
            |:  |..||.::.  |.:....:.|..|.:   |.|....|.|.|       |.|       .::
plant   293 DSMEHVDSDTMDLLQGVVAFRHYTIESSVK---RQFMARWKNLRP-------NDG-------FNS 340

  Fly   328 QAALMYDAVFVLVEAFNRILRKKPDQFRSNHLQRRSHGGSSSSSATGTNESSALLDCNTSKGWVT 392
            .|...||:|:::..|.:...|:..:...||........||       |.:.|||          :
plant   341 YAMYAYDSVWLVARALDVFFRENNNITFSNDPNLHKTNGS-------TIQLSAL----------S 388

  Fly   393 PWEQGEKISRVLRKVEIDGLSGEIRFDEDGRRINYTLHVVEMSVNSTLQQVAEWRDDAGLLPLHS 457
            .:.:|||..:::..:...|::|.|:||.|..|:|....|:.:. .:..:.|..|.:.:||..:|.
plant   389 VFNEGEKFMKIILGMNHTGVTGPIQFDSDRNRVNPAYEVLNLE-GTAPRTVGYWSNHSGLSVVHP 452

  Fly   458 HNYASSSRSASASTGDYDRNHTYIVSSLLEEP------------------YLSLKQYTYGESLVG 504
            ...  .||..:.||.:...........:.:.|                  .:|...|      |.
plant   453 ETL--YSRPPNTSTANQRLKGIIYPGEVTKPPRGWVFPNNGKPLRIGVPNRVSYTDY------VS 509

  Fly   505 NDR----FEGYCKDLADMLAAQLGIKYEIR----LVQDGNYGAENQYAPGGWDGMVGELIRKEAD 561
            .|:    ..|||.|:.: .|.:| :.|.:.    |..||....       .:|.:|.|::....|
plant   510 KDKNPPGVRGYCIDVFE-AAIEL-LPYPVPRTYILYGDGKRNP-------SYDNLVNEVVADNFD 565

  Fly   562 IAISAMTITAERERVIDFSKPFMTLGISIMIK-KPVKQTPGVFSFLNPLSQEIWISVILSYVGVS 625
            :|:..:||...|.|.:||::||:..|:.::.. |..|.:|  :|||.|.:.|:|......::.|.
plant   566 VAVGDITIVTNRTRYVDFTQPFIESGLVVVAPVKEAKSSP--WSFLKPFTIEMWAVTGGFFLFVG 628

  Fly   626 FVLYFVTRFPPYEWRIVRRPQADSTAQQPPGIIGGATLSEPQAHVPPVPPNEFTMLNSFWYSLAA 690
            .:::.:......|:|                                .||.. .::..||:|.:.
plant   629 AMVWILEHRFNQEFR--------------------------------GPPRR-QLITIFWFSFST 660

  Fly   691 FMQQGCDITPPSIAGRIAAAVWWFFTIILISSYTANLAAFLTVERMVAPIKTPEDLTMQTD---V 752
            ......:.|..|: ||....:|.|..:|:.|||||:|.:.||:.::.:.|:..:.|....:   |
plant   661 MFFSHRENTVSSL-GRFVLIIWLFVVLIINSSYTASLTSILTIRQLTSRIEGIDSLVTSNEPIGV 724

  Fly   753 NYGTLLYGSTWEFFRRSQIGLHNKMWEYMNANQHHSVHTYDE-----GIRRVRQSKGKYALLVES 812
            ..||         |.|      |.:...:|......|...||     .::|...:.|..|::.|.
plant   725 QDGT---------FAR------NYLINELNILPSRIVPLKDEEQYLSALQRGPNAGGVAAIVDEL 774

  Fly   813 PKNEYVNARPPCDTMKVGRNIDTKGFGVATPIGSPLRKRLNEAVLTLKENGELLRIRNKWWFDKT 877
            |..|.:.....|....||:.....|:|.|....|||...::.|:|.|.|.|||.:|..||...|.
plant   775 PYIEVLLTNSNCKFRTVGQEFTRTGWGFAFQRDSPLAVDMSTAILQLSEEGELEKIHRKWLNYKH 839

  Fly   878 ECNLDQETSTPNELSLSNVAGIYYILIGGLLLAVIVAIMEFFCR---------------NKTPQL 927
            ||::....|..::|||.:..|::  ||.|  :...:|:..||.|               .:..::
plant   840 ECSMQISNSEDSQLSLKSFWGLF--LICG--ITCFMALTVFFWRVFWQYQRLLPESADEERAGEV 900

  Fly   928 KSPGSNGSAGGVP 940
            ..|..:|.....|
plant   901 SEPSRSGRGSRAP 913

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIANP_476855.1 PBP1_iGluR_AMPA 41..453 CDD:107375 97/472 (21%)
ANF_receptor 53..434 CDD:279440 89/427 (21%)
PBP2_iGluR_AMPA 477..879 CDD:270433 99/436 (23%)
Lig_chan 612..907 CDD:278489 72/302 (24%)
GLR3.4NP_001030971.1 PBP1_GABAb_receptor_plant 62..450 CDD:380645 98/474 (21%)
Periplasmic_Binding_Protein_Type_2 <518..591 CDD:389745 23/81 (28%)
Lig_chan 615..869 CDD:365843 73/306 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 82 0.746 Domainoid score I2907
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 169 1.000 Inparanoid score I1556
OMA 1 1.010 - - QHG60082
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 1 1.000 - - mtm1027
orthoMCL 1 0.900 - - OOG6_100167
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
109.870

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