DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GluRIA and GLR1.3

DIOPT Version :9

Sequence 1:NP_476855.1 Gene:GluRIA / 38742 FlyBaseID:FBgn0004619 Length:991 Species:Drosophila melanogaster
Sequence 2:NP_199652.1 Gene:GLR1.3 / 834896 AraportID:AT5G48410 Length:860 Species:Arabidopsis thaliana


Alignment Length:985 Identity:196/985 - (19%)
Similarity:353/985 - (35%) Gaps:249/985 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 LKFLAYLHFICASSIFWPEFSSAQQQQQTVSLTEKIPLGAIFEQGT-------DDVQSAFKYAML 62
            |.||..|....:.|     |:|.:..........:|.:|.:.:.|:       :.|..|..|...
plant    12 LSFLLVLLLFISRS-----FASTKNDDVDGGKRVQIRVGLVLDLGSLKGKIVKNSVSMALSYFYA 71

  Fly    63 NHN-----LNVSSRRFELQAYVDVINTADAFKLSRLICNQFSRGVYSMLGAVSPDSFDTLHSYSN 122
            .||     ::||.|....:..:.:.:..|..|         :.||.:::|..|......|.....
plant    72 IHNDYKTRVSVSLRNSHGEPLLALASAVDLLK---------TEGVEAIIGGNSLLEAKLLGELGE 127

  Fly   123 TFQMPFVTPWFPEKVLAPSSGLLD--FAISMRPDYH--QAIIDT----------IQYYGWQSIIY 173
            ..::|.::              ||  |::|:....|  ||..|:          |..:.|.|:..
plant   128 KARVPMIS--------------LDSPFSLSLSKYTHLIQATHDSTSEAKGITSFINVFDWNSVAL 178

  Fly   174 LYDSHDGLLRLQQIYQELKPGNETFRVQMVKRIANVTMAIEF----LHTLEDLGRFSKKRIVLDC 234
            :|:.||......|:..|....|.. |||. |....|:.:.:|    |..|:|||           
plant   179 VYEDHDDWRESMQLLVEHFHENGV-RVQS-KVGFTVSSSEDFVMGRLQQLKDLG----------- 230

  Fly   235 PAEMAKEIIVQHVRDI------KLGRRTYHYLLSGLVMDNH-WPSDVVEFGAINITGFRIVDSNR 292
                 ..:.|.|:.::      ...||.      ||:.|.. |   ::....:|.....|.|..:
plant   231 -----TTVFVVHLSEVIATHLFPCARRL------GLMGDGFVW---ILTAKTMNSFHENIDDFTK 281

  Fly   293 RAVRDFHDSRKRLEPSGQSQSQNAGGPNSLPAISAQAALM-------YDAVFVLVEAFNRILRKK 350
            :|:......:..:..|.:.|:.......|||...|:...:       :|..|.|..|...|  :.
plant   282 QAMEGVVGFKSYIPMSIELQNFTLRWRKSLPVEEAELTRLSISGIWAHDIAFALARAAEVI--RM 344

  Fly   351 PDQFRSNHLQRRSHGGSSSSSATGTNESSALLDCNTSKGWVTPWEQGEKISRVLRKVEIDGLSGE 415
            |                        |.:|.||               |:|:    |...:||||:
plant   345 P------------------------NVTSTLL---------------EEIT----KTRFNGLSGD 366

  Fly   416 IRFDEDGRRINYTLHVVEMSVNSTLQQVAEWRDDAGLLPLHSHNYASSSRSASASTGDYDRNHTY 480
            .:.: |.:.::....::.| :.|:.::|       |.|   :.|.:.|:|...:||  :::..|.
plant   367 FQLN-DKKLLSNKFEIINM-IGSSERRV-------GFL---NSNGSFSNRRHLSST--HNKLETI 417

  Fly   481 IVSSLLEEPYLSLKQYTYGESLVGND------------RFEGYCKDLADMLAAQL---GIKYEIR 530
            |...       ...|...|.||:.:|            ||....|...|.:..:|   |...|:.
plant   418 IWPG-------GSAQSPKGTSLIDSDRKKLRVLVTSSNRFPRLMKVETDPVTNELIVEGFCIEVF 475

  Fly   531 LVQDGNYGAENQYAP----GGWDGMVGEL--IRKEADIAISAMTITAERERVIDFSKPFMTLGIS 589
            ......:..|.:|.|    ..:|.:...|  .:.:.|.|:..:|||:.|...:||:.||..:|:.
plant   476 RASISPFNYEVEYIPWLNGSNYDNLAYALHSQKDKYDAAVGDITITSNRSTYVDFTLPFTEMGLG 540

  Fly   590 IMIKKPVKQTPGVFSFLNPLSQEIWISVILSYVGVSFVLYFVTRFPPYEWRIVRRPQADSTAQQP 654
            |:   .||:. .::.|..||:.::||:....:|....:::.:.|....|::        .:..|.
plant   541 IV---AVKER-SMWVFFQPLTPDLWITSAFFFVLTGVIVWLIERAENKEFQ--------GSWPQQ 593

  Fly   655 PGIIGGATLSEPQAHVPPVPPNEFTMLNSFWYSLAAFMQQGCDITPPSIAGRIAAAVWWFFTIIL 719
            .|::                         .|:..:..:....:....::: |....||.|..:||
plant   594 IGVV-------------------------LWFGFSTLVYAHREKLKHNLS-RFVVTVWVFAVLIL 632

  Fly   720 ISSYTANLAAFLTVERMVAPIKTPEDLTMQTDVNYGTLLYGSTWEFFRRSQIGLHNKMWEYMNAN 784
            .:||||.|.:.:||::          :...::.:|...|.||.     .:.:.|.:.....|.:.
plant   633 TASYTATLTSMMTVQQ----------IRFNSNEDYVGHLSGSL-----IANVALTSSSLRAMRSL 682

  Fly   785 QHHSVHTYDEGIRRVRQSKGKYALLVESPKNEYVNARPPCDTMKVGRNIDTKGFGVATPIGSPLR 849
            ..:|...|.:.:    .:|....::.|.|..:.|....|.....|.....|.|||.....|..|.
plant   683 GLNSAADYAQAL----LNKTVSFVVDELPYLKVVLGENPTHFFMVKTQSTTNGFGFMFQKGFELV 743

  Fly   850 KRLNEAVLTLKENGELLRIRNKWWFDKTECNLDQETSTPNELSLSNVAGIYYILIGGLLLAVIVA 914
            ..::..:..|: ..|.|....|.|||........:||.|  ::|....|::.|:  |:..|..:|
plant   744 PNVSREISKLR-TSEKLNEMEKRWFDNQLPYTTDDTSNP--ITLYRFRGLFIII--GVSFAFALA 803

  Fly   915 IMEFFC-RNK 923
            ::...| |:|
plant   804 VLVILCLRDK 813

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIANP_476855.1 PBP1_iGluR_AMPA 41..453 CDD:107375 86/455 (19%)
ANF_receptor 53..434 CDD:279440 80/417 (19%)
PBP2_iGluR_AMPA 477..879 CDD:270433 84/422 (20%)
Lig_chan 612..907 CDD:278489 54/294 (18%)
GLR1.3NP_199652.1 PBP1_GABAb_receptor 43..405 CDD:107361 89/468 (19%)
ANF_receptor 57..385 CDD:279440 81/424 (19%)
GluR_Plant 438..767 CDD:270404 74/386 (19%)
Lig_chan 559..798 CDD:278489 55/296 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 82 0.746 Domainoid score I2907
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG60082
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 1 1.000 - - mtm1027
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
87.920

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