DRSC/TRiP Functional Genomics Resources

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Protein Alignment GluRIA and grik5-like.1

DIOPT Version :9

Sequence 1:NP_476855.1 Gene:GluRIA / 38742 FlyBaseID:FBgn0004619 Length:991 Species:Drosophila melanogaster
Sequence 2:NP_001072565.1 Gene:grik5-like.1 / 780020 XenbaseID:XB-GENE-5860197 Length:479 Species:Xenopus tropicalis


Alignment Length:452 Identity:167/452 - (36%)
Similarity:252/452 - (55%) Gaps:52/452 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   482 VSSLLEEPYLSLKQYTYGESLVGNDRFEGYCKDLADMLAAQLGIKYEIRLVQDGNYGAENQYAPG 546
            |::::|:|:          |:......||:|.||...||..||..|.|:.|:||.|||::|  .|
 Frog    45 VTTIMEQPF----------SMKTESGMEGFCIDLLSELAQSLGFNYTIKEVKDGRYGAKDQ--DG 97

  Fly   547 GWDGMVGELIRKEADIAISAMTITAERERVIDFSKPFMTLGISIMIKK-PVKQTPGVFSFLNPLS 610
            .|:|||||::|||||:|::.:|||..|||.:.|:||||..||||:::| .|.:...:|.||.|.|
 Frog    98 NWNGMVGEVLRKEADLAVAPLTITGARERELAFTKPFMQTGISILLRKDDVSENSYLFGFLTPFS 162

  Fly   611 QEIWISVILSYVGVSFVLYFVTRFPPYEWRIVRRPQADSTAQQPPGIIGGATLSEPQAHVPPVPP 675
            :|.||.::::||..|..|:.|.|..|.||                     ..||..|        
 Frog   163 KETWIGILVAYVVTSLCLFLVGRLSPCEW---------------------TELSTEQ-------- 198

  Fly   676 NEFTMLNSFWYSLAAFMQQGCDITPPSIAGRIAAAVWWFFTIILISSYTANLAAFLTVERM-VAP 739
            |.|..|||.|:.:.||..||.:..|.|::.||.|.:||.|:|:|:::|.|:.||||..:.| ...
 Frog   199 NNFNFLNSLWFGVGAFTLQGAEPHPKSVSARIIAVIWWIFSIVLVAAYIASFAAFLNSDSMQTTN 263

  Fly   740 IKTPEDLTMQTDVNYGTLLYGSTWEFFRRSQIGLHNKMWEYMNANQHH-SVHTYDEGIRRVRQSK 803
            |:|.|||..|..:.:||:...||::||:.|:...:..::|||:..:.. .|.::.||:|||::| 
 Frog   264 IQTFEDLVNQRTLEFGTINSSSTFQFFKNSKNPTYRMIYEYMDKRKDELLVKSFAEGVRRVKES- 327

  Fly   804 GKYALLVESPKNEYVNARPPCDTMKVGRNIDTKGFGVATPIGSPLRKRLNEAVLTLKENGELLRI 868
             .||.|.||...:.:.|: .||.::..:.|..:|:|:|..:.|||.|.|:.|:|...|:|.:..:
 Frog   328 -NYAFLGESVMQDIMVAK-HCDLVRAPQIIAGRGYGIAASLDSPLIKPLSVAILEQTESGNIEYL 390

  Fly   869 RNKWWFDKTECNLDQETSTPNELSLSNVAGIYYILIGGLLLAVIVAIMEFF--CRNKTPQLK 928
            |.||| |.| ||:.:.... |.:....:.||:.||..||.|.||.|::|..  .||...|.|
 Frog   391 RKKWW-DNT-CNMKRSAGW-NPVQPHTLGGIFLILGIGLALGVIAALVELVLKARNNADQQK 449

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIANP_476855.1 PBP1_iGluR_AMPA 41..453 CDD:107375
ANF_receptor 53..434 CDD:279440
PBP2_iGluR_AMPA 477..879 CDD:270433 149/399 (37%)
Lig_chan 612..907 CDD:278489 99/296 (33%)
grik5-like.1NP_001072565.1 PBP2_iGluR_non_NMDA_like 41..396 CDD:270403 147/395 (37%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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