DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GluRIA and grin3ba

DIOPT Version :9

Sequence 1:NP_476855.1 Gene:GluRIA / 38742 FlyBaseID:FBgn0004619 Length:991 Species:Drosophila melanogaster
Sequence 2:XP_021323058.1 Gene:grin3ba / 566411 ZFINID:ZDB-GENE-070912-354 Length:1118 Species:Danio rerio


Alignment Length:1062 Identity:225/1062 - (21%)
Similarity:398/1062 - (37%) Gaps:299/1062 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 KFLAYLHF---ICASSIFWPEFSSAQQQQQTVSLTEKIPLGAIF-EQGTDDVQSAFKYAML---- 62
            :||||||.   :......:|.....|.......:...:.|||:. .:....:|.|...|::    
Zfish     7 RFLAYLHVGLQVALQMFIYPCHLHPQPCHILARIGHTVRLGALLPTRQQSRIQGALNRALVHLRQ 71

  Fly    63 --------NHNLNVSSRRFELQAYVDVINTADAFKLSRLICNQF-SRGVYSMLGAVSPDSFDTL- 117
                    |.:|.|.||        :.:| .|...:.|.:|... .:||.::|  ..|.|.:.| 
Zfish    72 SGNNFLPYNLSLEVLSR--------EPLN-GDPESMFRCVCQDIVVQGVSAVL--AFPQSHEELI 125

  Fly   118 --HSYSNTFQMPFVT------PW-----FPEKVLA--PSSGLLD--FAISMRPDYHQAIIDTIQY 165
              ...|:..::||::      |.     |..:::.  |.|||.|  .|:.:|.            
Zfish   126 QVEFMSSFLEIPFISIIEQGEPLKTQNRFHLQMMTRMPPSGLSDLLLAVLLRG------------ 178

  Fly   166 YGWQ---SIIYLYDSHDGLL-RLQQIYQELKPGN-----------ETFRVQMVKRIANVTMAIEF 215
             |||   :.:.....:.|:| .|||      .|:           ||..:..::...:....:|.
Zfish   179 -GWQGGAATVCPGGGNTGMLEELQQ------RGHLGLDGAHWHLWETLNLSRLEENISEDKVMEL 236

  Fly   216 LHTLEDLGRFSKKRIVLDCPAEMAKEIIVQHVRDIKLGRRTYH--YLLSGLVMDNHWPSDVVEFG 278
            |..|  |.|         .|:..|..::: ...|.:......|  :.|||.:...||        
Zfish   237 LSQL--LSR---------TPSAPASSVVL-FGSDPECTATVLHCAHQLSGTLPPMHW-------- 281

  Fly   279 AINITGFRIVDSNRRAVRDFHDSRKRLEPSGQSQSQNAGGPNSLPAISAQAALMYDAVFVLVEAF 343
               |.|:.:                              ..:||.:|.:...||         |:
Zfish   282 ---IMGYPL------------------------------SLDSLHSIGSPLGLM---------AY 304

  Fly   344 NRILRKKPDQFRSNHLQRRSHGGSSSSSATGTNESSALL----DCNTSKGWVTPWEQGEKISRVL 404
            ..:.||..:.:..:.||..   |.:..:||......||:    :|............|:.::|.|
Zfish   305 GEVNRKPLNFYIRDTLQLI---GRAVYAATMVRPDLALIQNMVNCFDKPNKHELPSSGQYLARFL 366

  Fly   405 RKVEIDGLSGEIRFDEDGRRI--NYTLHVVEMSVNSTLQ----QVAEWR------DDAGLLP--- 454
            ......||:|.:|.:....|:  :...|:..:..:...|    .||.|:      ::.||.|   
Zfish   367 SNTSFTGLTGPVRVERSFSRVLTSQRFHIWSLQRDPLGQPSWVTVASWQSGRLELEEQGLWPGVT 431

  Fly   455 -------------------------------LHSHNYASS---SRSASASTG----DYDRNHTYI 481
                                           |..|.:..:   ........|    |...|::.:
Zfish   432 QHQREDGPGIRLGGRWQAGLPVAGSRLRVVTLVEHPFVFTREVDEEGQCPAGQLCLDPQTNNSEV 496

  Fly   482 VSSLLEEPYLSLKQYTYGESLVGNDR--FEGYCKDLADMLAAQLGIKYEIRLVQDGNYGAENQYA 544
            ::.|..|    |:| |...||..:.|  ..|||.||.:.||..:..::::.:|.||.|||   :.
Zfish   497 LNQLFRE----LEQ-TNSSSLPTDMRKCCYGYCIDLLEKLAEDMHFEFDLYIVGDGKYGA---WK 553

  Fly   545 PGGWDGMVGELIRKEADIAISAMTITAERERVIDFSKPFMTLGISIMIKKPVKQTPGVFSFLNPL 609
            .|.|.|:||:|:...||:|:::.:|.:.|.|||||:.||.:..:.|:::......| :.:|:.||
Zfish   554 GGRWSGLVGDLLSGVADMAVTSFSINSARSRVIDFTSPFFSTSLGILVRSKDTAAP-IGAFMWPL 617

  Fly   610 SQEIWISVILSYVGVSFVLYFVTRFPPYEWRIVRRPQADSTAQQPPGIIGGATLSEPQAHVPPVP 674
            ...:|:.:   :|.:.....|:|.   |||            ..|.|                :.
Zfish   618 HWSMWVGI---FVALHITALFITL---YEW------------NSPFG----------------MT 648

  Fly   675 PNEFTMLNSFWYSLA-------AFMQQGCDITPPSIAGRIAAAVWWFFTIILISSYTANLAAFLT 732
            |:....:..|.||.|       .|.:.....||....||....:|..|.::::|||||||||.:.
Zfish   649 PHGRNRIRVFSYSSALNLCYAILFGRTVASKTPKCWTGRFLMNLWAIFCLLVLSSYTANLAAVMV 713

  Fly   733 VERMVAPIKTPEDLTMQTDV---------NYGTLLYGSTWEFFRRSQIGLHNKMWEYMNANQHHS 788
            .|      ||.|:::...||         .:||:...|..::.::|...:|    |||   :..:
Zfish   714 GE------KTFEEVSGIHDVKLHHPSLGFRFGTVRESSAEDYVKKSFPEMH----EYM---RRFN 765

  Fly   789 VHTYDEGIRRVRQSKGKY-ALLVESPKNEY-VNARPPCDTMKVGRNIDTKGFGVATPIGSPLRKR 851
            ..|..:|:..::....:. |.:::....:| |:....|..:.||:....:|:|:..|..|||.:.
Zfish   766 KPTTPDGVSTLKTDPPQLDAFIMDKALLDYEVSIDADCKLLTVGKPFAIEGYGIGLPQNSPLTRN 830

  Fly   852 LNEAVLTLKENGELLRIRNKWW---------FDKTECNLDQETSTPNELSLSNVAGIYYILIGGL 907
            ::|.|...|.:|.:..:.:||:         |..||         ..::.:.:.:|::.:|..|:
Zfish   831 VSEYVSRYKSDGYMDMLHDKWYKVVPCGKRVFAVTE---------TLQMGIQHFSGLFVLLCVGV 886

  Fly   908 LLAVIVAIMEF-FCRNKTPQLK 928
            ..|::..:.|. |.|...|.|:
Zfish   887 AGALLTLLGEHAFFRFILPHLR 908

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIANP_476855.1 PBP1_iGluR_AMPA 41..453 CDD:107375 90/476 (19%)
ANF_receptor 53..434 CDD:279440 82/434 (19%)
PBP2_iGluR_AMPA 477..879 CDD:270433 111/430 (26%)
Lig_chan 612..907 CDD:278489 69/321 (21%)
grin3baXP_021323058.1 Periplasmic_Binding_Protein_Type_1 26..428 CDD:324556 93/496 (19%)
PBP2_iGluR_NMDA_Nr3 457..852 CDD:270438 112/450 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170590931
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.740

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