DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GluRIA and GluRIID

DIOPT Version :9

Sequence 1:NP_476855.1 Gene:GluRIA / 38742 FlyBaseID:FBgn0004619 Length:991 Species:Drosophila melanogaster
Sequence 2:NP_651982.1 Gene:GluRIID / 44483 FlyBaseID:FBgn0028422 Length:902 Species:Drosophila melanogaster


Alignment Length:1012 Identity:294/1012 - (29%)
Similarity:471/1012 - (46%) Gaps:168/1012 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 LHFICASSIFWPEFSSAQQQ-----QQTVSLTEKIPLGAIFEQGTDDVQSAFKYA--MLNHNLNV 68
            :|| |..|:.....|..|.|     ....|..:.|.||.|.:..||.::..|::|  ::|:.|.|
  Fly     1 MHF-CWISLIILSLSRVQAQFYGGNAYEASSGQSIRLGLITDDATDRIRQTFEHAISVVNNELGV 64

  Fly    69 S-SRRFELQAYVDVINTADAFKLSRLICNQFSRGVYSMLGAVSPDSFDTLHSYSNTFQMPFVTPW 132
            . ....|..||.   |:..||   ..:|.....||.::.|..:..:...|.:..::..:||:.|.
  Fly    65 PLVGETEQVAYG---NSVQAF---AQLCRLMQSGVGAVFGPAARHTASHLLNACDSKDIPFIYPH 123

  Fly   133 FPEKVLAPSSGLLDFAISMRP-DYHQAIIDTIQYYGWQSIIYLYDSHDGLLRLQQIYQELKPGNE 196
                 |:..|....|.:...| |...|:.|.:..:.|...|:.|:|.:.|..|..:.........
  Fly   124 -----LSWGSNPDGFNLHPSPEDIANALYDIVNQFEWSRFIFCYESAEYLKILDHLMTRYGIKGP 183

  Fly   197 TFRVQMVKRIANVTMAIEFLHTLEDLGRFSKKRIVLDCPAEMAKEIIVQHVRDIKLGRRTYHYLL 261
            ..:|...    ::.:...:...|..:.:....|||:........|::.| .:.:.:....|.|::
  Fly   184 VIKVMRY----DLNLNGNYKSVLRRIRKSEDSRIVVVGSTTGVAELLRQ-AQQVGIMNEDYTYII 243

  Fly   262 SGLVMDNHWPSDVVE--FGAINITGFRIVDSNRRAVRDFHDSRKRLEPSGQSQSQNAGGPNSLPA 324
            ..|   |....|:.|  :...||||.|:...::..|||..:  |..:..|:|:..|:|.    ..
  Fly   244 GNL---NLHTFDLEEYKYSEANITGIRMFSPDQEEVRDLME--KLHQELGESEPVNSGS----TF 299

  Fly   325 ISAQAALMYDAVFVLVEAFNRILRKKPDQFRSNHLQRRSHGGSSSSSATGTNESSALLDCNTSKG 389
            |:.:.||.||||.|:.|.             :.||..:..                :|:|:....
  Fly   300 ITMEMALTYDAVRVIAET-------------TKHLPYQPQ----------------MLNCSERHD 335

  Fly   390 WVTPWEQGEKISRVLRKVEI--DGLSGEIRFDEDGRRINYTLHVVEMSVNSTLQQVAEWRDDAGL 452
            .|.|  .|......:|.:||  ..::|.|.|:.:.|: .:|..|:|:. .|.|.:|..|.:    
  Fly   336 NVQP--DGSTFRNYMRSLEIKEKTITGRIYFEGNVRK-GFTFDVIELQ-TSGLVKVGTWEE---- 392

  Fly   453 LPLHSHNYASSSRSASASTGDYDR----NHTYIV-SSLLEEPYLSLKQYTYGESLVGNDRFEGYC 512
                ..::.......:.:..|.|.    |.|:|| .|:..:||.||.:..  ::|:||::|:||.
  Fly   393 ----GKDFEFQRPPQAVNFNDIDDGSLVNKTFIVLISVATKPYASLVESI--DTLIGNNQFQGYG 451

  Fly   513 KDLADMLAAQLGIKYEIRLVQDG--NYGAENQYAPGGWDGMVGELIRKEADIAISAMTITAERER 575
            .||...||.:||..:..|   ||  :||:.|: ......||:.|::...||:||:.:|||:|||.
  Fly   452 VDLIKELADKLGFNFTFR---DGGNDYGSFNK-TTNSTSGMLKEIVEGRADLAITDLTITSEREE 512

  Fly   576 VIDFSKPFMTLGISIMIKKPVKQTPGVFSFLNPLSQEIWISVILSYVGVSFVLYFVTRFPPYEWR 640
            |||||.|||.|||:|:..||.|..|.:|||::|.|.|:|:.:.::|:|||...:.:.|..|.|| 
  Fly   513 VIDFSIPFMNLGIAILYVKPQKAPPALFSFMDPFSSEVWLYLGIAYLGVSLCFFIIGRLSPIEW- 576

  Fly   641 IVRRPQADSTAQQPPGIIGGATLSEPQAHVPPVPPNEFTMLNSFWYSLAAFMQQGCDITPPSIAG 705
                       ..|          .|....|....|:||:.||.|::..|.:|||.:|.|.:::.
  Fly   577 -----------DNP----------YPCIEEPEELENQFTINNSLWFTTGALLQQGSEIAPKALST 620

  Fly   706 RIAAAVWWFFTIILISSYTANLAAFLTVERMVAPIKTPEDLT-MQTDVNYGTLLYGSTWEFFRRS 769
            |..:|:|||||:|::||||||||||||:|...:||.:.:||. .:.||.||....|||..||..|
  Fly   621 RTISAIWWFFTLIMVSSYTANLAAFLTIENPTSPINSVKDLADNKDDVQYGAKRTGSTRNFFSTS 685

  Fly   770 QIGLHNKMWEYMNANQHHSVHTYDEGIRRVRQSKGKYALLVESPKNEYVNARPPCDTMKVGRNID 834
            :..::.||.||:||:....:....:|:.:|: |..|||.|:||...|:...| .|:..|||..:|
  Fly   686 EEPIYIKMNEYLNAHPEMLMENNQQGVDKVK-SGTKYAFLMESTSIEFNTVR-ECNLTKVGDPLD 748

  Fly   835 TKGFGVATPIGSPLRKRLNEAVLTLKENGELLRIRNKWWFD--KTECNLDQETSTPNELSLSNVA 897
            .||:|:|.....|.|.:.|:|:|.|:|.|.|.|::||||.:  ...|:...:...|:||.:.|::
  Fly   749 EKGYGIAMVKNWPYRDKFNKALLELQEQGVLARLKNKWWNEVGAGVCSAKSDDDGPSELGVDNLS 813

  Fly   898 GIYYILIGGLLLAVIVAIM-----------------------EF-----FCRNKTPQLKSPGSNG 934
            |||.:|:.|.::::|::|:                       ||     |..|:.| |||     
  Fly   814 GIYVVLVIGSIISIIISILCWCYFVYKKAKNYEVPFCDALAEEFRIVIRFSENERP-LKS----- 872

  Fly   935 SAGGVPGMLASSTYQRDSLSDAIMHSQAKLAMQASSE 971
                     |.|.|.|...|     ||:..:::..||
  Fly   873 ---------AQSIYSRSRNS-----SQSIESLKTDSE 895

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIANP_476855.1 PBP1_iGluR_AMPA 41..453 CDD:107375 93/419 (22%)
ANF_receptor 53..434 CDD:279440 83/388 (21%)
PBP2_iGluR_AMPA 477..879 CDD:270433 161/407 (40%)
Lig_chan 612..907 CDD:278489 109/297 (37%)
GluRIIDNP_651982.1 PBP1_iGluR_Kainate 35..397 CDD:107377 93/427 (22%)
ANF_receptor 46..380 CDD:279440 84/390 (22%)
PBP2_iGluR_Kainate 417..788 CDD:270432 160/400 (40%)
Lig_chan 549..819 CDD:278489 108/293 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462528
Domainoid 1 1.000 82 0.746 Domainoid score I2907
eggNOG 1 0.900 - - E1_KOG1052
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 1 1.000 - - mtm1027
orthoMCL 1 0.900 - - OOG6_100167
Panther 1 1.100 - - P PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
87.740

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