DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GluRIA and Ekar

DIOPT Version :9

Sequence 1:NP_476855.1 Gene:GluRIA / 38742 FlyBaseID:FBgn0004619 Length:991 Species:Drosophila melanogaster
Sequence 2:NP_001036250.1 Gene:Ekar / 43806 FlyBaseID:FBgn0039916 Length:899 Species:Drosophila melanogaster


Alignment Length:981 Identity:296/981 - (30%)
Similarity:492/981 - (50%) Gaps:168/981 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    40 IPLGAIF--EQGTDDVQSAFKYAMLNHNLNVSSR---RFELQAYVDVINTADAFKLSRLICNQFS 99
            :.:||||  :.|..:.:.||:||:  |.||:...   ...:..||:.:|..|:|:..:.:|....
  Fly    23 VRIGAIFSNQPGMYNSELAFRYAI--HRLNMDKSLLPETTVDYYVEYVNRFDSFETVQKVCKLIR 85

  Fly   100 RGVYSMLGAVSP-DSFDTLH--SYSNTFQMPFVTPWFPEKVLAPSSGLLDFAISMRPD---YHQA 158
            .||.::.   || ||....|  |..:...:|.:           .....||:|::.|.   .:.|
  Fly    86 VGVQAVF---SPTDSVLATHINSICDALDIPNI-----------GRSAHDFSINVYPSKQLVNYA 136

  Fly   159 IIDTIQYYGWQSIIYLYDSHDGLLRLQQIYQELKPGNETFRVQMVKRIANVTMAIEF----LHTL 219
            ..|.|||..|.....|::..:|::.|.|:.:..   :....::.|.|.:.|:...||    :|  
  Fly   137 FNDVIQYLNWTRFGILHEKENGIINLHQLSRSF---HGEVHMRQVSRDSYVSALNEFKGKEIH-- 196

  Fly   220 EDLGRFSKKRIVLDCPAE----MAKEIIVQHVRDIKLGRRTYHYLLSGLVMDNHWPSDVVEFGAI 280
                     .|::|..:.    :.|.|:.|.:.:.|     ||||.:...::.:...| .::..:
  Fly   197 ---------NIIIDTNSNGISILLKNILQQQMNEYK-----YHYLFTSFDLETYDLED-FKYNFV 246

  Fly   281 NITGFRIVDSNRRAVRDFHDSRKRLEPSGQSQSQNAGGP------NSLPAISAQAALMYDAVFVL 339
            |||.||:||:....|:..      |:..|.........|      .....:.::.|||:|:|:|.
  Fly   247 NITSFRLVDTADVGVKQI------LKDIGLYSHHIFKKPYLNLHIKKSTILESEPALMFDSVYVF 305

  Fly   340 VEAFNRILRKKPDQFRSNHLQRRSHGGSSSSSATGTNESSALLDCNTSKGWVTPWEQGEKISRVL 404
            ......:              .:||      |.|..|     :.|.....    |:.|..:...|
  Fly   306 AIGLQTL--------------EQSH------SLTLLN-----ISCEEENS----WDGGLSLINYL 341

  Fly   405 RKVEIDGLSGEIRFDEDGRRINYTLHVVEMSVNSTLQQVAEWRDDAGLLPLHSH-NYASSSRSAS 468
            ..||..||:|.|:| :||:|:.:.|.::::..:| :.:|.||..       |.| |....|....
  Fly   342 NAVEWKGLTGPIQF-KDGQRVQFKLDLIKLKQHS-IVKVGEWTP-------HGHLNITEPSMFFD 397

  Fly   469 ASTGDYDRNHTYIVSSLLEEPYLSLKQYTYGESLVGNDRFEGYCKDLADMLAAQLGIKYEIRLVQ 533
            |.:    .|.|.:|.::||.||:.:.   ||::..||:||.|:|.|:.:.::.::|..|.:.||.
  Fly   398 AGS----MNVTLVVITILETPYVMMH---YGKNFTGNERFYGFCVDILETISREVGFDYILDLVP 455

  Fly   534 DGNYGAENQYAPGGWDGMVGELIRKEADIAISAMTITAERERVIDFSKPFMTLGISIMIKKPVKQ 598
            |..|||::. ..|.|:|||.:|::.:||:|:.:||||..||.||||:||||.|||||:.|.|..:
  Fly   456 DRKYGAKDP-ETGEWNGMVAQLMKYKADLAVGSMTITYARESVIDFTKPFMNLGISILFKVPTSE 519

  Fly   599 TPGVFSFLNPLSQEIWISVILSYVGVSFVLYFVTRFPPYEWRIVRRPQADSTAQQPPGIIGGATL 663
            ...:|||:|||:.||||.|:::|..||..:|.|.:..|.||:.:.....::.:      ||    
  Fly   520 PTRLFSFMNPLAIEIWIYVLIAYFLVSLCIYIVGKLSPIEWKCINACDLENIS------IG---- 574

  Fly   664 SEPQAHVPPVPPNEFTMLNSFWYSLAAFMQQGCDITPPSIAGRIAAAVWWFFTIILISSYTANLA 728
                        |:|::.:|||:::..||||..||.|.:::.||.::.|.||::|:::|||||||
  Fly   575 ------------NQFSLTDSFWFTIGTFMQQSPDIYPRAMSTRIISSTWGFFSLIIVASYTANLA 627

  Fly   729 AFLTVERMVAPIKTPEDLTMQTDVNYGTLLYGSTWEFFRRSQIGLHNKMWEYMNANQHHSVH--T 791
            ||||.|||:.||:..|||..||:::||||..|||..|||.|.|..:.|:|..|: |:..|..  |
  Fly   628 AFLTTERMINPIENAEDLASQTEISYGTLDSGSTMTFFRDSVIETYKKIWRSMD-NKKPSAFTTT 691

  Fly   792 YDEGIRRVRQSKGKYALLVESPKNEYVNARPPCDTMKVGRNIDTKGFGVATPIGSPLRKRLNEAV 856
            |::||:||.|  |.||.|:||...:|:..| .|:..::|..:||||:|:|||.|||.|.:::.|:
  Fly   692 YEDGIKRVNQ--GNYAFLMESTMLDYIVQR-DCNLTQIGGLLDTKGYGIATPKGSPWRDKISLAI 753

  Fly   857 LTLKENGELLRIRNKWWFDKTECNLDQET---STPNELSLSNVAGIYYILIGGLLLAVIVAIMEF 918
            |.|:|.|::..:.:|||.:..|....:.|   |..|.|.|.::.|::.:||.|:::|.:||..||
  Fly   754 LELQERGDIQMLYDKWWKNTDETCTRKNTSKQSKANSLGLESIGGVFVVLIAGIIVAAVVAFFEF 818

  Fly   919 FCRNKTPQLKSPGSNGSAGGVPGMLASSTYQRDSLSDAIMHSQAKLAMQASSEY--DERLVGVEL 981
            :...:.....:|..:         :.::.|.:|.:            :::...|  .:|...:|:
  Fly   819 WYNFRYNYEATPSQS---------VVNNKYNQDGI------------LESERNYTPPDRSFWIEI 862

  Fly   982 ASNVRY 987
            |..:||
  Fly   863 AEELRY 868

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIANP_476855.1 PBP1_iGluR_AMPA 41..453 CDD:107375 99/436 (23%)
ANF_receptor 53..434 CDD:279440 90/403 (22%)
PBP2_iGluR_AMPA 477..879 CDD:270433 168/403 (42%)
Lig_chan 612..907 CDD:278489 117/299 (39%)
EkarNP_001036250.1 PBP1_iGluR_Kainate 24..388 CDD:107377 101/443 (23%)
ANF_receptor 39..371 CDD:279440 90/403 (22%)
PBP2_iGluR_Kainate 402..771 CDD:270432 167/398 (42%)
Lig_chan 533..807 CDD:278489 117/299 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462573
Domainoid 1 1.000 82 0.746 Domainoid score I2907
eggNOG 1 0.900 - - E1_KOG1052
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 1 1.000 - - mtm1027
orthoMCL 1 0.900 - - OOG6_100167
Panther 1 1.100 - - P PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
87.740

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