DRSC/TRiP Functional Genomics Resources

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Protein Alignment GluRIA and Ir60a

DIOPT Version :9

Sequence 1:NP_476855.1 Gene:GluRIA / 38742 FlyBaseID:FBgn0004619 Length:991 Species:Drosophila melanogaster
Sequence 2:NP_611901.1 Gene:Ir60a / 37881 FlyBaseID:FBgn0034994 Length:716 Species:Drosophila melanogaster


Alignment Length:735 Identity:128/735 - (17%)
Similarity:248/735 - (33%) Gaps:217/735 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   341 EAFNRILRK------KPDQFRSNHLQRRSHGGSSSSSATGTNESSALLDCNTSKGWVTPWEQGEK 399
            |.|::::.:      .||  |....|.|.  .|..:...||.:...|:   .:..:|...:..::
  Fly    95 EGFSKLINEAVTNPGPPD--REELFQMRV--ASDYNITNGTEDKGELI---LADNYVIVVDSVDR 152

  Fly   400 ISRVLRK--VEIDGLSGEIRF--------------------DEDGRRINYTLHVVEMSVNSTL-- 440
            :..:::|  ||:...:...||                    .:|...:.|...|..:..|||:  
  Fly   153 LKELMKKKIVEMRSWNPGARFLVLFHNATCRNRPLGVASNIFKDLMEMFYVHRVALLYANSTMNY 217

  Fly   441 ------------------QQVAEWRDDAGLLPLHSHNYASSSRSASASTGDYDRNHTYIVSSLLE 487
                              |.|.:..|.    .|:.:|....:......:|...||.|:...|.:.
  Fly   218 NLLVNDYYSNVNCRILNVQSVGQCHDG----KLYPNNAVVKASMQDYVSGFSPRNCTFFACSSIS 278

  Fly   488 EPYLSLKQYTYGESLVGND-RFEGYCKDLADMLAAQLGIKYEI--------RLVQDGNYGAENQY 543
            .|::.      .:.::|.: |..|:.|:         .:|:::        |...||        
  Fly   279 APFVE------ADCILGLEMRILGFMKN---------RLKFDVNQTCSLESRGEMDG-------- 320

  Fly   544 APGGWDGMVGELIRKEADIAISAMTITAERERVID-------FSKPFMTLGISIMIKKPVKQT-P 600
             |..|.|::|::...|.|..........|   |.|       :.:...|..|.:..::|..|. .
  Fly   321 -PANWTGLLGKVQNNECDFVFGGYYPDNE---VADHFWGSDTYLQDAHTWYIKMADRRPAWQALV 381

  Fly   601 GVFSFLNPLSQEIWISVILSYVGVSFVLYFVTRFPPYEWRIVRRPQADSTAQQPPGIIGGATLSE 665
            |:|....      ||..||..: :|::.:|....                           .|.|
  Fly   382 GIFEAYT------WIGFILILI-ISWLFWFTLVM---------------------------ILPE 412

  Fly   666 PQAHVPPVPPNEFTMLNSFWYSLAAFMQQG--CDITPPSIAGRIAAAVWWFFTIILISSYTANLA 728
            |:.:    .....|.:|:...:::..:|:.  |:.|      |:      ||  :.::.|..|:.
  Fly   413 PKYY----QQLSLTAINALAVTISIAVQERPICETT------RL------FF--MALTLYGLNVV 459

  Fly   729 AFLTVERMVAPIKTP---EDLTMQTDVNYGTLLYGSTWEFFRRSQIGLHNKMWEYMNANQHHSVH 790
            |..| .:|:|..:.|   ..|...|:|....:.:|...|  .|......:.||.:         :
  Fly   460 ATYT-SKMIATFQDPGYLHQLDELTEVVAAGIPFGGHEE--SRDWFENDDDMWIF---------N 512

  Fly   791 TYDEGIRRVRQSK-------GKYALL------VESPKNEYVNARPPCDTMKVGRNIDTKGFGVAT 842
            .|:.....:.|||       |:..:|      ::||..:.:.|.|        .|:.:....:..
  Fly   513 GYNISPEFIPQSKNLEAVKWGQRCILSNRMYTMQSPLADVIYAFP--------NNVFSSPVQMIM 569

  Fly   843 PIGSPLRKRLNEAVLTLKENGELLRIRNKWWFDKTECN-----LDQETSTPNELSLSNVAGIYYI 902
            ..|.|....:|..:..:::.|...:|...:.::.|..|     ..|...|...|:..::.|.::|
  Fly   570 KAGFPFLFEMNSIIRLMRDVGIFQKIDADFRYNNTYLNRINKMRPQFPETAIVLTTEHLKGPFFI 634

  Fly   903 LIGGLLLAVIVAIMEFFCRNKTPQLKSPGSNGSAGGVPGMLASSTYQRDSLSDAIMHSQAKLAMQ 967
            |:.|...|.:..|.|........|                |.|::.|:|..||.....:.:...:
  Fly   635 LVVGSCWAALTFIGELIIHRWRTQ----------------LVSTSEQQDRRSDKRRRRRRRRKPE 683

  Fly   968 ASSEYDERLVGVELASNVRY 987
            ..:.:..:   |::|..||:
  Fly   684 KDNRWQRQ---VQVAPVVRF 700

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIANP_476855.1 PBP1_iGluR_AMPA 41..453 CDD:107375 26/159 (16%)
ANF_receptor 53..434 CDD:279440 20/120 (17%)
PBP2_iGluR_AMPA 477..879 CDD:270433 76/436 (17%)
Lig_chan 612..907 CDD:278489 56/317 (18%)
Ir60aNP_611901.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462542
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.830

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