DRSC/TRiP Functional Genomics Resources

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Protein Alignment GluRIA and Ir40a

DIOPT Version :10

Sequence 1:NP_476855.1 Gene:GluRIA / 38742 FlyBaseID:FBgn0004619 Length:991 Species:Drosophila melanogaster
Sequence 2:NP_610140.4 Gene:Ir40a / 35449 FlyBaseID:FBgn0259683 Length:732 Species:Drosophila melanogaster


Alignment Length:445 Identity:91/445 - (20%)
Similarity:167/445 - (37%) Gaps:120/445 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   550 GMVGELIRKEADIAISAMTITAERERVIDFSKPFMTLGISIMIKKPVKQTPGVF----------- 603
            |.:|.|...:||..:..:.::.||.:.|:||  |.||..|           |.|           
  Fly   304 GGIGLLQSGQADFFLGDVGLSWERRKAIEFS--FFTLADS-----------GAFATHAPRRLNEA 355

  Fly   604 -SFLNPLSQEIWISVILSYVGVSFVLYFVTRFPPYEWRIVRRPQADSTAQQPPGIIGGATLSEPQ 667
             :.:.|..|:||..:||:.:....:.|.:... ||.|   ||..|:|..:.         |.|..
  Fly   356 LAIMRPFKQDIWPHLILTIIFSGPIFYGIIAL-PYIW---RRRWANSDVEH---------LGELY 407

  Fly   668 AH---VPPVPPNEF-----TMLNS-----------FWYSLAAFMQQGCDITPPSIAGRIAAAVWW 713
            .|   :..:.|...     |:|::           .|::|..|::|.|:........:....|:|
  Fly   408 IHMTYLKEITPRLLKLKPRTVLSAHQMPHQLFQKCIWFTLRLFLKQSCNELHNGYRAKFLTIVYW 472

  Fly   714 F-FTIILISSYTANLAA----------FLTVERMVAPI----------KTPEDLTMQTDVNYGTL 757
            . .|.:|...|:|.|.:          ..|::|:.|.:          |....|.|   :..||.
  Fly   473 IAATYVLADVYSAQLTSQFARPAREPPINTLQRLQAAMIHDGYRLYVEKESSSLEM---LENGTE 534

  Fly   758 LYGSTWEFFRRSQIGLHNKMWEYMNANQHHSVHTYDEGIRRVRQSKGKYALLVESPKNEYVNARP 822
            |:...:...|:          :.:|..|...:.:.:.||:.:.:. |:...::...:..:.|.:.
  Fly   535 LFRQLYALMRQ----------QVINDPQGFFIDSVEAGIKLIAEG-GEDKAVLGGRETLFFNVQQ 588

  Fly   823 -PCDTMKVGRNIDTKGFGVATPIGSPLRKRLNEAVLTLKENG-----------------ELLRI- 868
             ..:..::.:.:.|:...||..||.|....||..::.|.|:|                 |..|| 
  Fly   589 YGSNNFQLSQKLYTRYSAVAVQIGCPFLGSLNNVLMQLFESGILDKMTAAEYAKQYQEVEATRIY 653

  Fly   869 ------RNKWWFDKTECNLDQETSTPNELSLSNVAGIYYILIGGLLLAVIVAIME 917
                  :|...:.:|| :.|....:|  |:|..:.|.:..|..|.|.|.::.::|
  Fly   654 KGSVQAKNSEAYSRTE-SYDSTVISP--LNLRMLQGAFIALGVGSLAAGVILLLE 705

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIANP_476855.1 PBP1_iGluR_AMPA 41..456 CDD:380603
PBP2_iGluR_AMPA 477..879 CDD:270433 80/405 (20%)
Lig_chan 610..906 CDD:459656 70/360 (19%)
Ir40aNP_610140.4 Lig_chan-Glu_bd <265..336 CDD:463166 10/33 (30%)
Periplasmic_Binding_Protein_Type_2 297..>391 CDD:473866 25/100 (25%)
Periplasmic_Binding_Protein_Type_2 <496..637 CDD:473866 27/154 (18%)
Blue background indicates that the domain is not in the aligned region.

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