DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GluRIA and Ir25a

DIOPT Version :9

Sequence 1:NP_476855.1 Gene:GluRIA / 38742 FlyBaseID:FBgn0004619 Length:991 Species:Drosophila melanogaster
Sequence 2:NP_001260049.1 Gene:Ir25a / 33683 FlyBaseID:FBgn0031634 Length:947 Species:Drosophila melanogaster


Alignment Length:1064 Identity:238/1064 - (22%)
Similarity:419/1064 - (39%) Gaps:287/1064 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 KFLAYLHFICASSIFWPEFSSAQQQQQTVSLTEKIPLGAIFEQGTDDVQSAFKYAMLNHNLNVSS 70
            |.|..|.|:...|.|..|.::     ||   |:.|.:..|.|...:....|.:..:.....|:  
  Fly    10 KILWLLGFLSLLSSFSLEIAA-----QT---TQNINVLFINEVDNEPAAKAVEVVLTYLKKNI-- 64

  Fly    71 RRFELQAYVDVI--NTADAFKLSRLICNQFSRGV------YSMLGAV-SPDSFDTLHSYSNTFQM 126
             |:.|...:|.|  |.:||..|...|||:::..:      :.:|... |..:.:|:.|::....:
  Fly    65 -RYGLSVQLDSIEANKSDAKVLLEAICNKYATSIEKKQTPHLILDTTKSGIASETVKSFTQALGL 128

  Fly   127 PFVTPWFPEKVLAPSSGLLD-----FAISMRPD---YHQAIIDTIQYYGWQSIIYLYD-----SH 178
            |.::..:.::........||     :.:.:.|.   ..:||...:.:....:...|||     .|
  Fly   129 PTISASYGQQGDLRQWRDLDEAKQKYLLQVMPPADIIPEAIRSIVIHMNITNAAILYDDSFVMDH 193

  Fly   179 DGLLRLQQIYQE------LKPGNETFRVQMVKRIANVTMAIEFLHTLEDLGRFSKKRIVLDC--P 235
            .....||.|...      .|.|... |.:.::::.|:.:...|:     ||.....|:||:.  |
  Fly   194 KYKSLLQNIQTRHVITAIAKDGKRE-REEQIEKLRNLDINNFFI-----LGTLQSIRMVLESVKP 252

  Fly   236 A----EMAKEIIVQHVRDI----------------------KLG--RRTYH-------------- 258
            |    ..|...|.|:..:|                      :||  |.||:              
  Fly   253 AYFERNFAWHAITQNEGEISSQRDNATIMFMKPMAYTQYRDRLGLLRTTYNLNEEPQLSSAFYFD 317

  Fly   259 ------YLLSGLVMDNHWPSDVVEFGAINITGFRIVDSNRR--AVRDFHDSRKRLEPSGQSQSQN 315
                  ..:..::....||.| :|:  :|...|:..::.:|  .:||:.  .|..||:...    
  Fly   318 LALRSFLTIKEMLQSGAWPKD-MEY--LNCDDFQGGNTPQRNLDLRDYF--TKITEPTSYG---- 373

  Fly   316 AGGPNSLPAISAQAALMYDAVFVLVEAFN--RILRKKPDQFRSNHLQRRSHGGSSSSSATGTNES 378
                            .:|.|....:.||  ..::.:.|   .|.||.|  ||||.:|.:     
  Fly   374 ----------------TFDLVTQSTQPFNGHSFMKFEMD---INVLQIR--GGSSVNSKS----- 412

  Fly   379 SALLDCNTSKGWVTPWEQGEKISRVLRKVEIDGLSGEIRFDEDGRRINYTLHVVEMSVNSTLQQV 443
                        :..|              |.||:.|:...::.:..|.|...|           
  Fly   413 ------------IGKW--------------ISGLNSELIVKDEEQMKNLTADTV----------- 440

  Fly   444 AEWRDDAGLLPLHSHNYASSSRSASASTGDYDRNHTYIVSSLLEEPYLSLKQYTYGESLVGNDRF 508
                                                |.:.::::.|:: ::..|..:.      :
  Fly   441 ------------------------------------YRIFTVVQAPFI-MRDETAPKG------Y 462

  Fly   509 EGYCKDLADMLAAQLGIKYEIRLVQDGNYGAENQYAPGGWDGMVGELIRKEADIAISAMTITAER 573
            :|||.||.:.:||.:...|.|:.|:||.:|  |....|.|:|:|.:|:.|:|||.:.:|::.|||
  Fly   463 KGYCIDLINEIAAIVHFDYTIQEVEDGKFG--NMDENGQWNGIVKKLMDKQADIGLGSMSVMAER 525

  Fly   574 ERVIDFSKPFMTL-GISIMIKKPVKQTPGVFSFLNPLSQEIWISVILSYVGVSFVLYFVTRFPPY 637
            |.||||:.|:..| ||:||:::| .....:|.||..|...:|:.::.:|...||:::...|:.||
  Fly   526 EIVIDFTVPYYDLVGITIMMQRP-SSPSSLFKFLTVLETNVWLCILAAYFFTSFLMWIFDRWSPY 589

  Fly   638 EWRIVRRPQADSTAQQPPGIIGGATLSEPQAHVPPVPPNEFTMLNSFWYSLAAFMQQGCDITPPS 702
            .::..|....|...::                       ||.:....|:.:.:...||....|.:
  Fly   590 SYQNNREKYKDDEEKR-----------------------EFNLKECLWFCMTSLTPQGGGEAPKN 631

  Fly   703 IAGRIAAAVWWFFTIILISSYTANLAAFLTVERMVAPIKTPEDLTMQTDVNYGTLLYGSTWEFF- 766
            ::||:.||.||.|..|:|:||||||||||||.|:..|:::.:||..|..:.|..|...|...:| 
  Fly   632 LSGRLVAATWWLFGFIIIASYTANLAAFLTVSRLDTPVESLDDLAKQYKILYAPLNGSSAMTYFE 696

  Fly   767 -------------------------RRSQIGL--------HNKMWEYMNANQHHSVHTYDEGIRR 798
                                     .||::.:        :.|||:.|...:..:  |.||.:.|
  Fly   697 RMSNIEQMFYEIWKDLSLNDSLTAVERSKLAVWDYPVSDKYTKMWQAMQEAKLPA--TLDEAVAR 759

  Fly   799 VRQSKGK--YALLVESPKNEYVNARPPCDTMKVGRNIDTKGFGVATPIGSPLRKRLNEAVLTLKE 861
            ||.|...  :|.|.::....|:.. ..||...||.....|.:.:|...||.|:.:.|.|:|||..
  Fly   760 VRNSTAATGFAFLGDATDIRYLQL-TNCDLQVVGEEFSRKPYAIAVQQGSHLKDQFNNAILTLLN 823

  Fly   862 NGELLRIRNKWW-FDKTECNLDQETSTPNELSLSNVAGIYYILIGGLLLAVIVAIMEF--FCRNK 923
            ..:|.:::.||| .|:.....|:.....:.:|:.|:.|::.::..|:.:|.|..:.|:  :...|
  Fly   824 KRQLEKLKEKWWKNDEALAKCDKPEDQSDGISIQNIGGVFIVIFVGIGMACITLVFEYWWYRYRK 888

  Fly   924 TPQL----KSPGSNGSAGGVPGML 943
            .|::    ::.....:|...||.|
  Fly   889 NPRIIDVAEANAERSNAADHPGKL 912

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIANP_476855.1 PBP1_iGluR_AMPA 41..453 CDD:107375 87/493 (18%)
ANF_receptor 53..434 CDD:279440 85/462 (18%)
PBP2_iGluR_AMPA 477..879 CDD:270433 126/439 (29%)
Lig_chan 612..907 CDD:278489 84/331 (25%)
Ir25aNP_001260049.1 PBP1_iGluR_AMPA_Like 40..426 CDD:107378 84/455 (18%)
PBP2_iGluR_putative 438..836 CDD:270435 125/480 (26%)
Lig_chan 565..870 CDD:278489 84/330 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462575
Domainoid 1 1.000 82 0.746 Domainoid score I2907
eggNOG 1 0.900 - - E1_KOG1052
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 169 1.000 Inparanoid score I1556
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 1 1.000 - - mtm1027
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
87.890

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