Protein Alignment GluRIA and C08B6.5

DIOPT Version :9

• Sequence 1: NP_476855.1
• Gene: GluRIA / 38742
• FlyBaseID: FBgn0004619
• Length: 991
• Species: Drosophila melanogaster
• Sequence 2: NP_505601.1
• Gene: C08B6.5 / 182390
• WormBaseID: WBGene00007426
• Length: 423
• Species: Caenorhabditis elegans
• Alignment Length: 448
• Identity: 85/448 - (18%)
• Similarity: 159/448 - (35%)
• Gaps: 147/448 - (32%)

  Fly   528 EIRLVQDGNYGAENQYAPGGWDGMVGELIRKEADIAISAMTITAERERVIDFSKPFMTLGISIMI 592
            |..:|.|  :|  |....|.:.|::|.|.:.:.|::..:|.||..|.....|:.|........:|
 Worm    35 EFNVVND--FG--NPQPDGNFSGIMGLLAQDKIDMSGLSMRITPARMEFAHFTFPIRYFQQVYII 95

  Fly   593 KKPVKQTPGVFSFLNPLSQEIWISVILSYVGVSFV-----LYFVTR----FPPYEWRI------- 641
            |:|.:.....|.|. |.:.::|:.::.:.:|.|.:     ||:.:|    |..|...:
 Worm    96 KRPAENDFRNFVFA-PFTTDMWLLLLATIMGASTMRFACALYWDSRVGSKFNIYTSSVLETFGLM 159

  Fly   642 ----VRRPQADST--------------AQQPPGIIGGATLSEPQAHVPPVPPNEF--TMLNSFWY 686
                |:.|.|.||              ||.....:.....:.|.:.:|.:..|:.  .:|:...|
 Worm   160 LKQRVQDPTAVSTMLLEGFLIVAMMSIAQYYQTSMNSRLTAPPSSRIPFLHQNQLIELLLDKETY 224

  Fly   687 SLAAFMQQGCDITPPSIAGRIAAAVWWFFTIILISSYTANLAAFLTVERMVA--PIKT-PEDLTM 748
                                    :.::|.:.|..|...|   ...::|.:|  ||.. ..:..:
 Worm   225 ------------------------LTYYFNLTLEGSTEKN---EYNIKRALAMNPIVVRAREADL 262

  Fly   749 QTDVNYGTLLYGSTWEFFRRSQIGLHNKMWEYMNANQHHSVHTYDEGIRRVRQSKGKYALLVESP 813
            ..::..|.:.| ||::.             |::  .|..||....:|:..:|.:.|..:
 Worm   263 IKEIQKGGVFY-STYDI-------------EFL--PQAVSVWDKRQGLTVIRDTSGILS------ 305

  Fly   814 KNEYVNARPPCDTMKVGRNIDTKGFGVATPIGSPLRKRLNEAVLTL---------------KENG 863
               ||                ..||.::   ...|.:..|:|:|.:               |:..
 Worm   306 ---YV----------------AFGFSIS---NRKLCQMFNKALLKILPGIASITLGPGYGTKKQP 348

  Fly   864 ELLRIRNKWWFDKTECNLDQETSTPNELSLSNVAGIYYI-LIG-GLLLAVIVAIMEFF 919
            |.:.::.|    ||..:|.:           ::..::|| ||| |:.||..:....||
 Worm   349 EDITVQVK----KTRLSLKK-----------HLEQLFYIYLIGCGIALAFFIIEKVFF 391

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
GluRIA	NP_476855.1	PBP1_iGluR_AMPA	41..453	CDD:107375
		ANF_receptor	53..434	CDD:279440
		PBP2_iGluR_AMPA	477..879	CDD:270433	74/404 (18%)
		Lig_chan	612..907	CDD:278489	58/350 (17%)
C08B6.5	NP_505601.1	Periplasmic_Binding_Protein_Type_2	13..>116	CDD:304360	22/85 (26%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG1052
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.900