Sequence 1: | NP_476855.1 | Gene: | GluRIA / 38742 | FlyBaseID: | FBgn0004619 | Length: | 991 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_579842.2 | Gene: | Grin3b / 170796 | RGDID: | 621705 | Length: | 1002 | Species: | Rattus norvegicus |
Alignment Length: | 1006 | Identity: | 207/1006 - (20%) |
---|---|---|---|
Similarity: | 351/1006 - (34%) | Gaps: | 346/1006 - (34%) |
- Green bases have known domain annotations that are detailed below.
Fly 62 LNHNLNVSSRRFELQAYVDVINTADAFKLSRLICN-----------------------QF----- 98
Fly 99 --------SRGVYSMLGAVSPDSFDTLHSYSNTFQMPFVTPWFPEKVLAPSSGLLDFAISMRPDY 155
Fly 156 HQAIIDTIQYYGWQ-------------SIIYLYDSHDG--------LLRLQQIYQELKPGNETFR 199
Fly 200 VQMVKRIANVTMAIEFLHTLEDLGRFSKKRIVLDCPAEMAKEIIVQHVRDIKLGRRTYHYLLSGL 264
Fly 265 VMDNHW------PSDVVEFGAINITGFRIVDSNRRAVRDFHDSRKRLEPS----GQSQSQNAGGP 319
Fly 320 NSLPAISAQAALMYDAVFVLVEAFNRILRKKPDQFRSNHLQRRSHGGSSSSSATGTNESSALL-- 382
Fly 383 -----DCNTSKGWVTPWEQGEKISRVLRKVEIDGLSGEIRFDEDGRRINYTLHVVEMSVN----- 437
Fly 438 -STLQQVAEWRDDAGLLPLHSHNYASSSRSASASTGDYDRNHTYIVSSLLEEPYLSLKQYTY-GE 500
Fly 501 SLVG--------ND--RFE--------------------GYCKDLADMLAAQLGIKYEIRLVQDG 535
Fly 536 NYGAENQYAPGGWDGMVGELIRKEADIAISAMTITAERERVIDFSKPFMTLGISIMIKKPVKQTP 600
Fly 601 GVFSFLNPLSQEIWISVILSYVGVSFVLYFVTRFPPYEWRIVRRPQADSTAQQPPGIIGGATLSE 665
Fly 666 PQAHVPPVPPNEFTMLNSFWYSLA-------AFMQQGCDITPPSIAGRIAAAVWWFFTIILISSY 723
Fly 724 TANLAAFLTVERMVAPIKTPEDLTMQTD---------VNYGTLLYGSTWEFFRRSQIGLHNKMWE 779
Fly 780 YMNANQHHSVHTYDEGIRRVRQSKGKY-ALLVESPKNEY-VNARPPCDTMKVGRNIDTKGFGVAT 842
Fly 843 PIGSPLRKRLNEAVLTLKENGELLRIRNKWW---------FDKTECNLDQETSTPNELSLSNVAG 898
Fly 899 IYYILIGGLLLAVIVAIME-FFCRNKTPQLK 928 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
GluRIA | NP_476855.1 | PBP1_iGluR_AMPA | 41..453 | CDD:107375 | 76/470 (16%) |
ANF_receptor | 53..434 | CDD:279440 | 71/445 (16%) | ||
PBP2_iGluR_AMPA | 477..879 | CDD:270433 | 114/459 (25%) | ||
Lig_chan | 612..907 | CDD:278489 | 72/321 (22%) | ||
Grin3b | NP_579842.2 | PBP1_iGluR_NMDA_NR3 | 21..405 | CDD:107372 | 78/483 (16%) |
PBP2_iGluR_NMDA_Nr3 | 414..808 | CDD:270438 | 112/445 (25%) | ||
Lig_chan | 576..842 | CDD:278489 | 72/321 (22%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 882..910 | ||||
Involved in the trafficking and surface expression of NMDARs. /evidence=ECO:0000250 | 951..984 | ||||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 1 | 0.930 | - | - | C166349649 | |
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
3 | 2.840 |