DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GluRIA and gria2a

DIOPT Version :9

Sequence 1:NP_476855.1 Gene:GluRIA / 38742 FlyBaseID:FBgn0004619 Length:991 Species:Drosophila melanogaster
Sequence 2:XP_005170953.1 Gene:gria2a / 170450 ZFINID:ZDB-GENE-020125-3 Length:893 Species:Danio rerio


Alignment Length:979 Identity:388/979 - (39%)
Similarity:556/979 - (56%) Gaps:160/979 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    40 IPLGAIFEQGTDDVQSAFKYAMLNHNLNVSSRRFELQAYVDVINTADAFKLSRLICNQFSRGVYS 104
            :.:|.:|.:|.|...|||:..|    :...:..|.|..::|.:..|::|.::...|:|||||||:
Zfish    22 VQIGGLFPRGADQEYSAFRIGM----VQFGTAEFRLTPHIDNLEVANSFAITNCFCSQFSRGVYA 82

  Fly   105 MLGAVSPDSFDTLHSYSNTFQMPFVTPWFPEKVLAPSSGLLDFAISMRPDYHQAIIDTIQYYGWQ 169
            :.|.....|.:|:.|:..|..:.|:||.|      |:.||..|.:.||||....:|..::||.|:
Zfish    83 IFGFYDKKSVNTITSFCETLHVSFITPSF------PADGLNQFVLQMRPDIKGPLISLVEYYKWE 141

  Fly   170 SIIYLYDSHDGLLRLQQIYQ----------ELKPGN-------ETFRVQMVKRIANVTMAIEFLH 217
            ...|||||..||..||.:..          .:..||       |.:|                 .
Zfish   142 KFAYLYDSDRGLSTLQAVLDTAAERKWQVTAINVGNLKDEWKDEAYR-----------------S 189

  Fly   218 TLEDLGRFSKKRIVLDCPAEMAKEIIVQHVRDIKLGR--RTYHYLLS--GLVMDNHWPSDV--VE 276
            ..:||...:::|::|||..:..|:|:.|   .|.:||  :.|||:::  |.|     ..|:  ::
Zfish   190 LFQDLENKNERRVILDCEQDKVKDIMEQ---VITIGRHVKGYHYIIANFGFV-----DGDLSKIQ 246

  Fly   277 FGAINITGFRIVDSNRRAVRDFHDSRKRLE----PSGQSQSQNAGGPNSLPAISAQAALMYDAVF 337
            :|..|::||:|||.:...|..|....:.||    |...|:            |...:||.||||.
Zfish   247 YGGANVSGFQIVDFDDPLVAKFDQRWEALEEKEYPGADSR------------IRYTSALTYDAVQ 299

  Fly   338 VLVEAFNRILRKKPDQFRSNHLQRRSHGGSSSSSATGTNESSALLDCNTSKGWVTPWEQGEKISR 402
            |:.|||..:.:::.|      :.||.:.|                ||..:.  ..||.||.:|.|
Zfish   300 VMTEAFRFLHKQRID------ISRRGNNG----------------DCLANP--AVPWAQGVEIER 340

  Fly   403 VLRKVEIDGLSGEIRFDEDGRRINYTLHVVEMSVNSTLQQVAEWRDDAGLLPLHSHNYASSSRSA 467
            .|::|.:|||:|.|:||:.|||:|||::|:|:. ||...::..|.:...:....|..:.:.:...
Zfish   341 ALKQVRVDGLTGNIQFDQYGRRVNYTVNVMELK-NSGPVKIGYWNEMDKMAVTKSDLFPNDTMGM 404

  Fly   468 SASTGDYDRNHTYIVSSLLEEPYLSLKQYTYGESLVGNDRFEGYCKDLADMLAAQLGIKYEIRLV 532
                    .|.|.||:::||.||:.||:  ..|....|:|:||||.|||..:|...|.||::|:|
Zfish   405 --------ENKTVIVTTILEAPYVMLKK--NAELFTDNERYEGYCVDLAAEIAKHCGFKYQLRIV 459

  Fly   533 QDGNYGAENQYAPGGWDGMVGELIRKEADIAISAMTITAERERVIDFSKPFMTLGISIMIKKPVK 597
            .||.|||.:.... .|:||||||:..:||||::.:|||..||.|||||||||:||||||||||.|
Zfish   460 ADGKYGARDAETK-IWNGMVGELVYGKADIAVAPLTITLVREEVIDFSKPFMSLGISIMIKKPQK 523

  Fly   598 QTPGVFSFLNPLSQEIWISVILSYVGVSFVLYFVTRFPPYEWRIVRRPQADSTAQQPPGIIGGAT 662
            ..|||||||:||:.|||:.::.:|:|||.||:.|:||.||||.         |.:...|.:|   
Zfish   524 SKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWH---------TEEFEDGQLG--- 576

  Fly   663 LSEPQAHVPPVPPNEFTMLNSFWYSLAAFMQQGCDITPPSIAGRIAAAVWWFFTIILISSYTANL 727
                    |....|||.:.||.|:||.|||||||||:|.|::|||...||||||:|:||||||||
Zfish   577 --------PSESTNEFGIFNSLWFSLGAFMQQGCDISPRSLSGRIVGGVWWFFTLIIISSYTANL 633

  Fly   728 AAFLTVERMVAPIKTPEDLTMQTDVNYGTLLYGSTWEFFRRSQIGLHNKMWEYM-NANQHHSVHT 791
            ||||||||||:||::.|||..||::.||||..|||.||||||:|.|.:|||:|| :|.....|..
Zfish   634 AAFLTVERMVSPIESAEDLAKQTEIAYGTLDAGSTKEFFRRSKIALFDKMWQYMKSAEPSVFVKN 698

  Fly   792 YDEGIRRVRQSKGKYALLVESPKNEYVNARPPCDTMKVGRNIDTKGFGVATPIGSPLRKRLNEAV 856
            ..||:.|||:||||||.|:||..|||:..|.||||||||.|:|:||:|:|||.||.||..:|.||
Zfish   699 TVEGVLRVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSALRNAVNLAV 763

  Fly   857 LTLKENGELLRIRNKWWFDKTEC-----NLDQETSTPNELSLSNVAGIYYILIGGLLLAVIVAIM 916
            |.|.|.|.|.:::||||:||.||     ...::||.   ||||||||::|||:|||.||::||::
Zfish   764 LKLNEQGLLDKLKNKWWYDKGECGSGGGESKEKTSA---LSLSNVAGVFYILVGGLGLAMLVALV 825

  Fly   917 EFFCRNKTPQLKSPGSNGSAGGVPGMLASSTYQRDSLSDAIMHSQAKLAMQASSEYDERLVGVEL 981
            ||..:::                    |.:...:.:.:|| |.|:|:|::..|:..:.|::..:.
Zfish   826 EFCYKSR--------------------AEAKRMKMTFTDA-MRSKARLSITGSTGENGRVLTPDF 869

  Fly   982 ASNV 985
            :..|
Zfish   870 SKAV 873

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIANP_476855.1 PBP1_iGluR_AMPA 41..453 CDD:107375 129/438 (29%)
ANF_receptor 53..434 CDD:279440 121/407 (30%)
PBP2_iGluR_AMPA 477..879 CDD:270433 224/402 (56%)
Lig_chan 612..907 CDD:278489 164/300 (55%)
gria2aXP_005170953.1 Periplasmic_Binding_Protein_Type_1 23..391 CDD:299141 129/439 (29%)
ANF_receptor 51..373 CDD:279440 118/388 (30%)
PBP2_iGluR_AMPA 406..783 CDD:270433 222/399 (56%)
Lig_chan 538..816 CDD:278489 164/300 (55%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170590942
Domainoid 1 1.000 371 1.000 Domainoid score I851
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 698 1.000 Inparanoid score I657
OMA 1 1.010 - - QHG60082
OrthoDB 1 1.010 - - D89427at33208
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 1 1.000 - - mtm6377
orthoMCL 1 0.900 - - OOG6_100167
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1312.770

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