DRSC/TRiP Functional Genomics Resources

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Protein Alignment GluRIA and LOC100334689

DIOPT Version :9

Sequence 1:NP_476855.1 Gene:GluRIA / 38742 FlyBaseID:FBgn0004619 Length:991 Species:Drosophila melanogaster
Sequence 2:XP_017206939.1 Gene:LOC100334689 / 100334689 -ID:- Length:991 Species:Danio rerio


Alignment Length:999 Identity:330/999 - (33%)
Similarity:513/999 - (51%) Gaps:156/999 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MHSRLKFLAYLHFICASSIFWPEFSSAQQQQQTVSLTEKIPLGAIFEQGTDDV------QSAFKY 59
            |.:|.:::.|...|.. .:||        .|.:..:...|.:|.||||....|      :.|||:
Zfish     1 MKNRREYVEYRSAIIV-VLFW--------IQSSFGMPHVIRIGGIFEQTDGPVALVSSEELAFKF 56

  Fly    60 AMLNHNLN-----VSSRRFELQAYVDVINTADAFKLSRLICNQFSRGVYSMLGAVSPDSFDTLHS 119
            |:.|.|.|     .::..:::|.    ||..|:|:.||..|:|.|.||.::.|.....|.:.:.|
Zfish    57 AVNNINRNRTLLPNTTLTYDIQR----INIYDSFEASRKACDQLSLGVVAIFGPSHSSSSNAVQS 117

  Fly   120 YSNTFQMPFV-TPWFPEKVLAPSSGLLDFAISMRPDYHQ---AIIDTIQYYGWQSIIYLYDSHDG 180
            ..|..::|.: ..|...    |......|..::.|||..   ||:|.:|:..|::...:||...|
Zfish   118 ICNALEVPHIQVRWKHH----PMDNRDTFYANLYPDYSSLSYAILDLVQFLKWKTATVVYDDSTG 178

  Fly   181 LLRLQQIYQELKPGNETFRVQMVKRIANVTM-AIEFLHTLEDLGRFSKKRIVLDCPAEMAKEIIV 244
            |:|||::.  :.|.....|:    :|..:.| .::....|:::.|..:.||:.||...||.:|:.
Zfish   179 LIRLQELI--MAPSRYNIRL----KIRQLPMDTVDTRPLLKEMKRSREFRIIFDCSHTMAAQILK 237

  Fly   245 QHVRDIKLGRRT--YHYLLS--GLVMDNHWPSDVVEFGAINITGFRIVDSNRRAVRDFHDS---R 302
            |..   .:|..|  |||:.:  .|:..|..|   ..|..:|:|||||::.:...|....:.   .
Zfish   238 QAQ---MMGMMTEYYHYIFTTLDLMAINLEP---YRFCGVNMTGFRILNVDNPQVASIVEKWSLE 296

  Fly   303 KRLEPSGQSQSQNAGGPNS--LPAI-SAQAALMYDAVFVLVEAFNRILRKKPDQFRSNHLQRRSH 364
            :::.|.          |:|  |..| :..|||.||||.::..::     :...|...|.||    
Zfish   297 RQIPPK----------PDSGLLEGIMTTDAALTYDAVHIVSVSY-----QHAPQMTVNSLQ---- 342

  Fly   365 GGSSSSSATGTNESSALLDCNTSKGWVTPWEQGEKISRVLRKVEIDGLSGEIRFDE-DGRRINYT 428
                               |:..|    ||..|.:....:::...|||:|.:.|:. .|.|.::.
Zfish   343 -------------------CHRHK----PWRFGGRFMSFIKESHWDGLTGRLCFNRTTGLRTDFD 384

  Fly   429 LHVVEMSVNSTLQQVAEWRDDAGLLPLHSHNYASSSRSASASTGDYDRNHTYIVSSLLEEPYLSL 493
            |.:|.:..:. ||:|.:|....||      |.....|....:..|...|.:.:::::|||||:.|
Zfish   385 LDIVSLKEDG-LQKVGKWSASGGL------NITEVPRQNGMNITDSLSNRSLVITTILEEPYVML 442

  Fly   494 KQYTYGESLVGNDRFEGYCKDLADMLAAQLGIKYEIRLVQDGNYGAENQYAPGGWDGMVGELIRK 558
            |:  ..::|||||||||:|.||...||:.||..|||.||.||.||.::.  .|.|:||:.||:..
Zfish   443 KK--SDKALVGNDRFEGFCIDLLKELASILGFSYEIHLVPDGKYGFQDD--KGQWNGMIRELMEH 503

  Fly   559 EADIAISAMTITAERERVIDFSKPFMTLGISIMIKKPVKQTPGVFSFLNPLSQEIWISVILSYVG 623
            .||:|::.:|||..||:.|||||||:..||||:.:||.....|.||||||::.:||:.::|:|:|
Zfish   504 RADLAVAPLTITFMREKAIDFSKPFLNTGISILYRKPNSTNSGFFSFLNPMTPDIWVYILLAYLG 568

  Fly   624 VSFVLYFVTRFPPYEWRIVRRPQADSTAQQPPGIIGGATLSEPQAHVPPVPPNEFTMLNSFWYSL 688
            ||.||:.:.||.||||       .|:....|     |:.:.|          |.||:|||||:.:
Zfish   569 VSCVLFVIARFSPYEW-------YDAHPCNP-----GSDVVE----------NNFTLLNSFWFGV 611

  Fly   689 AAFMQQGCDITPPSIAGRIAAAVWWFFTIILISSYTANLAAFLTVERMVAPIKTPEDLTMQTDVN 753
            .:.||||.::.|.:::.||...:|||||:|:|||||||||||||||||.:|:.:.:||..||.:.
Zfish   612 GSLMQQGSELMPKALSTRIIGGIWWFFTLIIISSYTANLAAFLTVERMDSPVDSADDLAKQTKIE 676

  Fly   754 YGTLLYGSTWEFFRRSQIGLHNKMWEYMNANQHHS-VHTYDEGIRRVRQSKGKYALLVESPKNEY 817
            ||.:..|:|..||::|::....|||.:|::.|..| |.:.::||:||  .|..||||:||...||
Zfish   677 YGVVKDGATMSFFKKSRVSTFEKMWAFMSSRQSTSFVKSIEDGIQRV--LKSDYALLMESTTIEY 739

  Fly   818 VNARPPCDTMKVGRNIDTKGFGVATPIGSPLRKRLNEAVLTLKENGELLRIRNKWWFDKTECNLD 882
            |..| .|:..:||..||:||:|:.||.|||.|.::..|:|.:.|:|.|..::.||| ..:.| |:
Zfish   740 VTRR-NCNLTQVGGIIDSKGYGIGTPKGSPYRDKITIAILGILEDGRLHMLKEKWW-SGSSC-LE 801

  Fly   883 QETSTPNELSLSNVAGIYYILIGGLLLAVIVAIMEFFCR-NKTPQLKS---------------PG 931
            .|......:.:.|:.||:.:|..||:|:|.|||.||..: .||.:.:.               ..
Zfish   802 DERYETGPMGIQNLGGIFIVLASGLVLSVFVAIGEFIYKLRKTAEREQVFLQCGDGRDQTVVHVR 866

  Fly   932 SNGSAGGVPGMLASSTYQRDSLSD 955
            ..|.|...|   |::::..|..||
Zfish   867 ETGEAQAPP---AAASHAEDGRSD 887

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIANP_476855.1 PBP1_iGluR_AMPA 41..453 CDD:107375 113/438 (26%)
ANF_receptor 53..434 CDD:279440 103/407 (25%)
PBP2_iGluR_AMPA 477..879 CDD:270433 180/402 (45%)
Lig_chan 612..907 CDD:278489 120/295 (41%)
LOC100334689XP_017206939.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170590927
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG60082
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100167
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R7871
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
76.680

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