DRSC/TRiP Functional Genomics Resources

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Protein Alignment GluRIA and LOC100149482

DIOPT Version :9

Sequence 1:NP_476855.1 Gene:GluRIA / 38742 FlyBaseID:FBgn0004619 Length:991 Species:Drosophila melanogaster
Sequence 2:XP_009290417.1 Gene:LOC100149482 / 100149482 -ID:- Length:1959 Species:Danio rerio


Alignment Length:885 Identity:202/885 - (22%)
Similarity:330/885 - (37%) Gaps:227/885 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   157 QAIIDTIQYYGWQSIIYLYDSHDGLLRLQQIYQELKPGNETFRVQMVKRIANVTMAIEFLHTLED 221
            :.|.:.::.|.|.:...:...|.|       ||                        :||..:|.
Zfish   184 EVIFEVLEEYDWTAFSVVSTRHHG-------YQ------------------------DFLSVVEG 217

  Fly   222 L--GRF---SKKRIVLDCPAEMAKEIIVQHVRDIKLGRRTYHYLLSGLVMDNHWPSDVVEFGAIN 281
            |  |.|   .||.||:            .::.|...|.||.                        
Zfish   218 LTDGSFIGWEKKSIVM------------LNLTDDPGGVRTQ------------------------ 246

  Fly   282 ITGFRIVDSNRRAVRDFHDSRKRLE-------PSGQSQSQN---AGGPNSLPAISAQAALMYDAV 336
                |::..|...||..:.|::..|       .:||:.:.:   |.|    ||:|...       
Zfish   247 ----RLLKENEAQVRLLYCSQEEAEQVFLAAWAAGQAGASHIWFAVG----PALSELG------- 296

  Fly   337 FVLVEAFNRILRKKPDQFRSNHLQRRSHGGS----------SSSSATG-----TNESSALLDCNT 386
              |.....|:...:|..:|....:|.:.|.|          ....|||     ||       |.|
Zfish   297 --LTGLPKRLFAVRPQGWRDEPRRRIARGVSILTHGAVALRKDYGATGGPHFVTN-------CQT 352

  Fly   387 SKGWVTPWEQGEKISRV---LRKVEIDGLSG-EIRFDEDGRRINYTLHVVEMSVNSTLQQVAEWR 447
                     .|.:..|:   :|......|.| :..|..:|...|..|.|:..:..|..:.|..|.
Zfish   353 ---------DGNRTQRIRGRMRYFSNITLGGRDYSFSNEGYLANPFLDVISYTPGSGWEDVGWWE 408

  Fly   448 DDAGLLPLHSHNYASSSRSASASTGDYDRNHTYIVSSLLEEPYLSLKQYTYGESLVGNDRF---- 508
            :  |:|.|   .|.:.||.........|..|..:| :|.|.|::.::...........|..    
Zfish   409 N--GVLRL---RYPAWSR
YGPFLQPPDDAQHLRVV-TLEERPFVIVELADAASGTCIRDSVPCRR 467

  Fly   509 ------------------EGYCKDLADMLAAQLGIKYEIRLVQDGNYGAENQYAPGGWDGMVGEL 555
                              :|:|.|:...||..:|..|::.||.:|.:|.:   ..|.|:|||||:
Zfish   468 PLNASALQEGVAPVKQCCKGFCIDILKRLARIVGFTYDLYLVTNGKHGKK---IDGVWNGMVGEV 529

  Fly   556 IRKEADIAISAMTITAERERVIDFSKPFMTLGISIMIKKPVKQTPGVFSFLNPLSQEIWISVILS 620
            :.|.||:||.::||..||..|:|||.||:..|||:|:.:. ..|....:||.|.|..:|:.:.:.
Zfish   530 VYKRADMAIGSLTINEERSEVVDFSVPFVETGISVMVSRS-NGTVSPSAFLEPYSPAVWVMMFVM 593

  Fly   621 YVGVSFVLYFVTR-FPPYEWRIVRRPQADSTAQQPPGIIGGATLSEPQAHVPPVPPNEFTMLNSF 684
            .:.|..|..|:.. |.|..:.  |..|:...|       ||               ::||:..|.
Zfish   594 CLTVVAVTVFIFEFFSPVGYN--RSLQSGKKA-------GG---------------SKFTIGKSI 634

  Fly   685 WYSLAAFMQQGCDI-TPPSIAGRIAAAVWWFFTIILISSYTANLAAFLTVERMVAPIKTPEDLTM 748
            |...|........: .|.....:|...||.||.:|.::|||||||||:..|..:..:....|...
Zfish   635 WLLWALVFNNSVPVENPKGTTSKIMVLVWAFFAVIFLASYTANLAAFMIQEEYIDTVSGLSDKKF 699

  Fly   749 Q------TDVNYGTLLYGSTWEFFRRSQIGLHNKMWEYMNANQHHSVHTYDEGIRRVRQSKGKYA 807
            |      ..:.:||:..|||.:..|.:...:|..|.:|   ||    .:.::.|..::..|....
Zfish   700 QHPTEQYPPLKFGTVPNGSTEKNIRSNYPDMHQYMVKY---NQ----KSVEDAISHLKTGKLDAF 757

  Fly   808 LLVESPKNEYVNARPPCDTMKV--GRNIDTKGFGVATPIGSPLRKRLNEAVLTLKENGELLRIRN 870
            :...:..|........|..|.:  |:...|.|:|:|....|..::.|:.|:|.|..:.|:..:..
Zfish   758 IYDAAVLNYMARKDEGCKVMTIGSGKVFATTGYGIALIKNSRWKRPLDLALLQLVGDDEIEMLER 822

  Fly   871 KWWFDKTECNLDQETSTPNELSLSNVAGIYYILIGGLLLAVIVAIMEFF-------CRNKTPQLK 928
            .|.  ...|:.|:.....::|.:.|:||::|:|:..:.|:::|...|..       |.:|.    
Zfish   823 LWL--SGICHNDKIEVMSSKLDIDNMAGVFYMLLVAMGLSLLVFAWEHLVYWRLRHCMSKM---- 881

  Fly   929 SPGSNGSAGGVPGMLASS--TYQRDSLSDAIMHSQAKLAM 966
                 |.:|.:..:||.|  .|...|..|......||:.:
Zfish   882 -----GQSGKLDFLLAFSRGMYSCCSFEDETAQGGAKVTV 916

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIANP_476855.1 PBP1_iGluR_AMPA 41..453 CDD:107375 62/329 (19%)
ANF_receptor 53..434 CDD:279440 58/310 (19%)
PBP2_iGluR_AMPA 477..879 CDD:270433 111/433 (26%)
Lig_chan 612..907 CDD:278489 71/304 (23%)
LOC100149482XP_009290417.1 PBP1_iGluR_NMDA_NR2 44..421 CDD:107373 65/341 (19%)
PBP2_iGluR_NMDA_Nr2 433..831 CDD:270436 112/435 (26%)
HisJ <487..>570 CDD:223904 37/86 (43%)
Lig_chan 585..857 CDD:278489 71/304 (23%)
NMDAR2_C 868..>900 CDD:287527 8/40 (20%)
FAM76 <1763..>1856 CDD:292665
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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