DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment axed and F56C3.9

DIOPT Version :9

Sequence 1:NP_001356975.1 Gene:axed / 38741 FlyBaseID:FBgn0035708 Length:582 Species:Drosophila melanogaster
Sequence 2:NP_508258.1 Gene:F56C3.9 / 186367 WormBaseID:WBGene00018946 Length:206 Species:Caenorhabditis elegans


Alignment Length:67 Identity:14/67 - (20%)
Similarity:24/67 - (35%) Gaps:21/67 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   335 NPNPFTTEDYGVALLHNTLQLIDMHAELQLSMPEISDLRFEELETLVKRDTL--------QLRSE 391
            |...|..|.|...||.....|  :|::           .:.|::.:.|:..|        :|..|
 Worm   114 NSEAFQNEIYDTELLVQLCYL--LHSQ-----------NYSEIDVVFKKIALIDNPLVVDRLVQE 165

  Fly   392 VT 393
            :|
 Worm   166 IT 167

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
axedNP_001356975.1 BTB <192..258 CDD:197585
BACK <354..423 CDD:355779 8/48 (17%)
F56C3.9NP_508258.1 BTB_POZ <34..116 CDD:365784 1/1 (100%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160164759
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.930

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