DRSC/TRiP Functional Genomics Resources

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Protein Alignment ndl and F12

DIOPT Version :10

Sequence 1:NP_523947.2 Gene:ndl / 38738 FlyBaseID:FBgn0002926 Length:2616 Species:Drosophila melanogaster
Sequence 2:NP_001014028.1 Gene:F12 / 306761 RGDID:1359175 Length:603 Species:Rattus norvegicus


Alignment Length:551 Identity:138/551 - (25%)
Similarity:210/551 - (38%) Gaps:134/551 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   887 ERSRCPEPDQFSCFGQQECIPAARWC----DNVVDCSDGSDESAC-----------------TCA 930
            :|.:|.|......|.:.|.     |.    ..|..|.....::.|                 ||.
  Rat   130 QREKCFESQLLKFFHENEI-----WFRTGPGGVARCQCKGPQAVCKLLTSQVCRVNPCLNGGTCL 189

  Fly   931 DRVDEERLCDGYEDCPMGEDELGCFGCESLAYSCYENPQDFAKRNRSTISMCYSRLERCDGFMNC 995
             .|::.|||    .||.|  ..|.|....|..:|||: :..:.|.::..:               
  Rat   190 -LVEDHRLC----HCPAG--YAGPFCDLDLKATCYED-RGLSYRGQAKTT--------------- 231

  Fly   996 LNGRDEEQCSMLVTDVA-DHMSHGASASEGYLYH----NYRGDWHPVCN--NGEKWAALACQMDE 1053
            |:|   ..|....::.. .:|:...:.|.|..:|    |...|..|.|.  :|::.:...|.:::
  Rat   232 LSG---APCQRWASEATYRNMTETQALSWGLGHHAFCRNPDNDTRPWCYVWSGDRLSWDYCDLEQ 293

  Fly  1054 NSRMDHSASLNVSFQTLTLPGPFIEPSLHAGVHFAQACHGRNSHDSLVDHVAYVKCPPMQCGLPS 1118
                       ....|||.|   :.|               .|||.|......::.|.    .||
  Rat   294 -----------CQMPTLTSP---VSP---------------ESHDMLKPRPPILQMPQ----FPS 325

  Fly  1119 KSSMLEHSKRVRRAVSDSKEIV-GD---------GRIVGGSYTSALQWPFVVAIYRNGKFHCGGT 1173
            .|..|::|.|.:..||.:..:| |.         .|:|||........|::.|:|....| |.|:
  Rat   326 LSDALDNSTRNQNVVSRTSTVVCGQRFRKRLSSLRRVVGGLVALPGSHPYIAALYWGDSF-CAGS 389

  Fly  1174 IYSDRWIISAAHCVINY-GKYFYEVRAGLLRRSSYSPATQIQPVSHVVVHQAYERRSMRNDLSLL 1237
            :....|:::||||:... ......|..|..|.:......|...|....:|:.:..::.::||:||
  Rat   390 LIDPCWVLTAAHCLQKRPAPEELTVVLGQDRHNQSCERCQTLAVHSYRLHEGFSSKTYQHDLALL 454

  Fly  1238 RL---------LNPLQFNRWVKPICLPDKGRTTVGDDWIWGPVEHTLCTVVGWGAIREKGPS-SD 1292
            ||         |:|     .|:|:|||.....         |.|..||.|.|||...|.... :.
  Rat   455 RLRGRKNSCAILSP-----HVQPVCLPSSAAP---------PSETVLCEVAGWGHQFEGAEEYAT 505

  Fly  1293 PMRQVIVPI--RKKCTDPEDQASE----DICAGDPDGGRDACQGDSGGPLFCRSVSNPDEFYLAG 1351
            .:::..||.  ..:|:........    .:|||..:||.|||||||||||.|.......:..|.|
  Rat   506 FLQEAQVPFISLDRCSSSNVHGDAILPGMLCAGFLEGGADACQGDSGGPLVCDEGVTERQLTLRG 570

  Fly  1352 VVSHGNGCARPQEFGVYTRVTLYLDWLEMAT 1382
            |:|.|:||....:.||||.|..||||::..|
  Rat   571 VISWGSGCGDRNKPGVYTDVANYLDWIQEHT 601

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ndlNP_523947.2 LDLa 891..927 CDD:238060 7/39 (18%)
Tryp_SPc 1145..1379 CDD:238113 78/250 (31%)
LDLa 1399..1430 CDD:238060
LDLa 1710..1743 CDD:238060
LDLa 1776..1811 CDD:238060
DUF1986 2041..2158 CDD:286432
LDLa 2309..2339 CDD:197566
LDLa 2350..2383 CDD:197566
LDLa 2421..2457 CDD:238060
F12NP_001014028.1 FN2 40..87 CDD:238019
EGF_CA 95..130 CDD:238011 138/551 (25%)
FN1 132..170 CDD:238018 7/42 (17%)
EGF 177..207 CDD:394967 10/36 (28%)
Kringle 216..294 CDD:395005 17/107 (16%)
Tryp_SPc 362..600 CDD:238113 78/252 (31%)
Blue background indicates that the domain is not in the aligned region.

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