DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8270 and Rmc1

DIOPT Version :9

Sequence 1:NP_648047.2 Gene:CG8270 / 38734 FlyBaseID:FBgn0035703 Length:642 Species:Drosophila melanogaster
Sequence 2:NP_083899.1 Gene:Rmc1 / 76482 MGIID:1916528 Length:657 Species:Mus musculus


Alignment Length:660 Identity:240/660 - (36%)
Similarity:385/660 - (58%) Gaps:55/660 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 HYIELTPNPIRFDAVSQLTNVFFDDSNKQIFAVRSGGATGVVVKGPGSPDDVVISFCMSDRGGAI 72
            :|:||...|::|:..:.:..||||::|||:||||||||||||||||  .|...|||.|.|| |.:
Mouse     6 YYLELCERPVQFEKANPVNCVFFDEANKQVFAVRSGGATGVVVKGP--DDRNPISFRMDDR-GEV 67

  Fly    73 RSIKFSPDNQILAVQRKENSVEFICFQGDQPLLQDIITHQVKTL---IHGFVWVHNREVALISNT 134
            :.||||.:|:||||||...:|:|..|..|...|:  .|.:.||.   |.||.|..:.|:..|::.
Mouse    68 KCIKFSLENKILAVQRTAKAVDFCNFIPDNSQLE--YTQECKTKNANILGFCWTSSTEIVFITDQ 130

  Fly   135 GVEVYTVVPEKRQVRSVKSLSIGIKWFAWCCDANVALLCTSE-GNSLIPVLVKQKVITKLPKVDL 198
            |:|.|.|:||||.::.:||.:|.:.|:.:|.::.|.||.|:. .|.|.|...:...::||||.::
Mouse   131 GIEFYQVMPEKRSLKLLKSHNINVNWYTYCPESAVILLSTTVLENVLQPFHFRAGTMSKLPKFEI 195

  Fly   199 GNPSR------DVQESKVTLGQVYGVLAVLILQ-----SNSTTGLMEVEVHLLNGPGLAPRKCHV 252
            ..|:.      .:.|..:.:..:||.|.:|.|:     ||||..  ||.::.|...| |.:|.|:
Mouse   196 ELPAAPKSTKLSLSERDIAMATIYGQLYILFLRHHSRTSNSTGA--EVVLYHLPREG-ACKKMHI 257

  Fly   253 LRLSLLGRFAINTVDNLIVVHHQASGTSLLFDISLPGEVINEITYHTPITPGRSIKPFGLKL--P 315
            |:|:..|:||:|.||||:|||||.:.||::|||.|.||....:|:|.|:.|.|||:|:.:.|  |
Mouse   258 LKLNRTGKFALNVVDNLVVVHHQDTETSVIFDIRLRGEFDGTVTFHHPVLPARSIQPYEIPLAGP 322

  Fly   316 SLSPDGQILQCELYSTHWVLFQPNIVIDAKLGCMWFLNLCIEPLCQLISDRIRLTEFLLQRSNGK 380
            :.......:.|:|||:.|::|||:|:|.|..|.:|.|.:.::|:..|:.|:.||.:|||||...|
Mouse   323 AAVTSQSPVPCKLYSSSWIVFQPDIIISASQGYLWNLQVKLQPIVNLLPDKGRLMDFLLQRKECK 387

  Fly   381 QMLLKVIGQLVDDQYKGTLLPVLETIFSRINKIYASWVQLELQNQTAQPSNVKTTTLKQSTPPI- 444
            .::|.|..|::.:..:.| |||:.|:|.::|..|..::..:.....|..:.     ..:|.||: 
Mouse   388 AVVLSVCSQMLSESDRAT-LPVIATVFDKLNHEYKKYLDADQSYTMAVEAG-----QSRSNPPLK 446

  Fly   445 ------VLIEQLDM-VQIFQRIARRPYTE----------SILMLYLQSLNKFNIAAQEELSKMII 492
                  .:::|.|: .|:..     |:.|          ::||.|::|||:|.|..|..|.:::|
Mouse   447 RPVRTQAVVDQSDVYTQVLS-----PFVENKEMPHKFVIAVLMEYIRSLNQFQIPVQHYLHELVI 506

  Fly   493 SELISNRSFDTLRRLVSYSMLLESKSVACFLLSHSNVDTAISQVAIDMLGRIE-AHEIIIEVMLG 556
            ..|:.:..|..|.:.:.|.:|.:||.:||.|||..:......|:::|||.|:. |::.|:||:|.
Mouse   507 KTLVQHNLFYMLHQFLQYHVLSDSKPLACLLLSLESFYPPAHQLSLDMLKRLSTANDEIVEVLLS 571

  Fly   557 QGKVIDALRLAKNSMGLEKVPARKFLEAAHKTKDDLIFHSVYRFFQMRNLKLYETLSFPKAEQCT 621
            :.:|:.|||..:...|.:.:.|||||:||.:|.|.::|::::|||:.||.:|....:|...|.|.
Mouse   572 KHQVLAALRFIRGIGGHDNISARKFLDAARQTDDVMLFYTIFRFFEQRNQRLRGNPNFTPGEHCE 636

  Fly   622 EFIQHYNNTF 631
            |.:..:...|
Mouse   637 EHVAFFKQVF 646

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8270NP_648047.2 Mic1 461..616 CDD:284457 57/165 (35%)
Rmc1NP_083899.1 Mic1 475..631 CDD:284457 55/155 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167850382
Domainoid 1 1.000 300 1.000 Domainoid score I1426
eggNOG 1 0.900 - - E1_KOG2377
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H8341
Inparanoid 1 1.050 403 1.000 Inparanoid score I1903
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG59981
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0006644
OrthoInspector 1 1.000 - - oto94235
orthoMCL 1 0.900 - - OOG6_104796
Panther 1 1.100 - - LDO PTHR12897
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4196
SonicParanoid 1 1.000 - - X5651
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1514.790

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