DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8270 and rmc1

DIOPT Version :9

Sequence 1:NP_648047.2 Gene:CG8270 / 38734 FlyBaseID:FBgn0035703 Length:642 Species:Drosophila melanogaster
Sequence 2:NP_001349475.1 Gene:rmc1 / 494078 ZFINID:ZDB-GENE-041212-46 Length:654 Species:Danio rerio


Alignment Length:650 Identity:241/650 - (37%)
Similarity:391/650 - (60%) Gaps:31/650 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 NGIHYIELTPNPIRFDAVSQLTNVFFDDSNKQIFAVRSGGATGVVVKGPGSPDDVVISFCMSDRG 69
            |..:|:||:.||::|:..|.:.|||||::|||:||||||||||||||||  .|...::|.|.|: 
Zfish     2 NDEYYLELSENPVQFENASSVNNVFFDEANKQVFAVRSGGATGVVVKGP--DDKSSVAFRMDDK- 63

  Fly    70 GAIRSIKFSPDNQILAVQRKENSVEFICFQGDQPLLQDIITHQVKT---LIHGFVWVHNREVALI 131
            |.::.||||..|:||||||...||:||.|..|.|.|:  .:|:.||   .|.||.|.:..|:..:
Zfish    64 GEVKCIKFSLGNKILAVQRTTKSVDFINFIPDYPHLE--FSHECKTKNASILGFCWTNWNEIVFV 126

  Fly   132 SNTGVEVYTVVPEKRQVRSVKSLSIGIKWFAWCCDANVALLCTS-EGNSLIPVLVKQKVITKLPK 195
            ::.|:|.|.|:|:||.::.:||.||.:.|:.:|.:..|.||.|: :||.|.|...|...::|:.|
Zfish   127 TDQGIEFYQVLPDKRTLKLLKSQSINVNWYIYCPETAVLLLSTTVQGNVLQPFAFKTATMSKMSK 191

  Fly   196 VDLGNPS------RDVQESKVTLGQVYGVLAVLILQSNS-TTGLMEVEVHLLNGP--GLAPRKCH 251
            .::..|:      ..:.|..:.:..:|..|.|:.|:.:| ||.....||.|.:.|  |.. ::.:
Zfish   192 FEIELPAVPKPAKLSLSERDIAVATIYDQLYVMYLKHHSRTTNSPGAEVVLYHLPREGTC-KRTN 255

  Fly   252 VLRLSLLGRFAINTVDNLIVVHHQASGTSLLFDISLPGEVINEITYHTPITPGRSIKPFGLKL-- 314
            ||||:..|:||||.||||:|||||::.|||::||.| .|:...:..|.|:.|.|||.||.:.|  
Zfish   256 VLRLNTTGKFAINVVDNLVVVHHQSTQTSLIYDIKL-RELDGNVNVHQPVLPARSINPFKIPLTG 319

  Fly   315 PSLSPDGQILQCELYSTHWVLFQPNIVIDAKLGCMWFLNLCIEPLCQLISDRIRLTEFLLQRSNG 379
            |:.:|....|.|||||:.|.:|||:|:|.|..|.:|:|.:.::|...|:.|:.:|.:|||:|.:.
Zfish   320 PAAAPSQAPLPCELYSSSWSVFQPDIIISASEGFLWYLQVKLQPTLNLLQDKGKLMDFLLRRRDC 384

  Fly   380 KQMLLKVIGQLVDDQYKGTLLPVLETIFSRINKIYASWVQLELQNQTAQPSN-VKTTTLKQSTPP 443
            |.::|.|..|::....||. |.|:.|:|.::|::|..::..|.....|..|. .:::..|:....
Zfish   385 KMVILSVCSQMLIGGDKGN-LSVVATVFDKLNQVYKEYLDAEQAYTAAMESGPSRSSAYKRPVRT 448

  Fly   444 IVLIEQLDM----VQIF--QRIARRPYTESILMLYLQSLNKFNIAAQEELSKMIISELISNRSFD 502
            ..:|:|.||    :..|  ::..:..:..:::|.|::|||:|.|..|..|.:::|..|:.:..|.
Zfish   449 QAVIDQSDMYTHVLSDFTEKKEVKHKFIIAVVMEYIRSLNQFQIPVQHYLYELVIKTLVQHNLFY 513

  Fly   503 TLRRLVSYSMLLESKSVACFLLSHSNVDTAISQVAIDMLGRIE-AHEIIIEVMLGQGKVIDALRL 566
            .|.:.:.|.:|.:||.:||.|||..:......|:::|||.|:. |::.|:||:|.:.:|:.|||.
Zfish   514 MLHQFLQYHVLTDSKPLACLLLSLESTYPPAYQLSLDMLKRLSTANDEIVEVLLSKQQVLGALRF 578

  Fly   567 AKNSMGLEKVPARKFLEAAHKTKDDLIFHSVYRFFQMRNLKLYETLSFPKAEQCTEFIQHYNNTF 631
            .::..|.:...|||||:||.:|.|.::|::::|||:.||::|.....|...|.|.|.:.::...|
Zfish   579 IRSVGGHDNASARKFLDAARQTNDTMLFYTIFRFFETRNMRLRGNPGFNPGEHCEEHVSYFKQVF 643

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8270NP_648047.2 Mic1 461..616 CDD:284457 54/155 (35%)
rmc1NP_001349475.1 Mic1 472..626 CDD:311160 53/153 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170596302
Domainoid 1 1.000 304 1.000 Domainoid score I1348
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H8341
Inparanoid 1 1.050 305 1.000 Inparanoid score I2628
OMA 1 1.010 - - QHG59981
OrthoDB 1 1.010 - - D191938at33208
OrthoFinder 1 1.000 - - FOG0006644
OrthoInspector 1 1.000 - - oto39382
orthoMCL 1 0.900 - - OOG6_104796
Panther 1 1.100 - - LDO PTHR12897
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4196
SonicParanoid 1 1.000 - - X5651
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1413.940

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