DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG10147 and CTCF

DIOPT Version :9

Sequence 1:NP_001261477.1 Gene:CG10147 / 38733 FlyBaseID:FBgn0035702 Length:448 Species:Drosophila melanogaster
Sequence 2:NP_648109.1 Gene:CTCF / 38817 FlyBaseID:FBgn0035769 Length:818 Species:Drosophila melanogaster


Alignment Length:393 Identity:104/393 - (26%)
Similarity:145/393 - (36%) Gaps:92/393 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    91 RRKPVYEVDEDEEEELELEELLLEP--PEMIICDTNLSAQNTPIVAEQAPPTLVFHTFTENVQQP 153
            |:.||....|..:.|.|||||:.||  ..|:   |.||.......|.:|...    |.|.|..:.
  Fly   190 RKNPVIPKPEPMDLERELEELVDEPDISSMV---TELSDYTVDEAAVEAATA----TLTPNEAEV 247

  Fly   154 PETEKKALEEPPLTTYKCDLCADEFREEKRL--ILHKKE--------------HQGHMLYHCTEP 202
            .|.|..|..|            ||..::|.:  :|..||              ..||. |.|  |
  Fly   248 YEFEDNATTE------------DENADKKDVDFVLSNKEVKLKTASSTSQNSNASGHK-YSC--P 297

  Fly   203 GCE-EAFNRF---ENLRQHELEHSEVGMRFVCEEEGCNRMYRHKASLKYHQSKAHDIGKPLKTHM 263
            .|. .|..:|   .:.|.|::|.|     |.|..  |.|.:|....|:.| ...|...||   |.
  Fly   298 HCPYTASKKFLITRHSRSHDVEPS-----FKCSI--CERSFRSNVGLQNH-INTHMGNKP---HK 351

  Fly   264 CEFCGRVFKTGSALSQH-RFTH-----------------------------GDQLVLPYACELPE 298
            |:.|...|.|...|.:| |:.|                             |::   ||.|  |.
  Fly   352 CKLCESAFTTSGELVRHTRYKHTKEKPHKCTECTYASVELTKLRRHMTCHTGER---PYQC--PH 411

  Fly   299 CSMRFYSTEKLKIHMMRHQGIKNFSCPYCGLKKTTKNELRLHINYHTL--ERTWSCKDCPKVCNS 361
            |:.......|||.||:.|.|.|.:.|..|..:.|..|.|:.|...|::  :..:.|..||..|..
  Fly   412 CTYASQDMFKLKRHMVIHTGEKKYQCDICKSRFTQSNSLKAHKLIHSVVDKPVFQCNYCPTTCGR 476

  Fly   362 STSLKKHIRAIHEKARDYACSYCEKKFATTDTRKYHEMTHTGEKNFECHVCGKKFIQPSALRTHR 426
            ...|:.||:.:|.......|..|.::.......|.|..:|.|||.:.|.:|....:....|.:|.
  Fly   477 KADLRVHIKHMHTSDVPMTCRRCGQQLPDRYQYKLHVKSHEGEKCYSCKLCSYASVTQRHLASHM 541

  Fly   427 KVH 429
            .:|
  Fly   542 LIH 544

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG10147NP_001261477.1 zf-AD 7..80 CDD:214871
C2H2 Zn finger 171..191 CDD:275368 6/35 (17%)
zf-C2H2_8 199..287 CDD:292531 29/121 (24%)
C2H2 Zn finger 199..221 CDD:275368 7/25 (28%)
C2H2 Zn finger 230..253 CDD:275368 6/22 (27%)
C2H2 Zn finger 264..284 CDD:275368 7/20 (35%)
C2H2 Zn finger 294..316 CDD:275368 8/21 (38%)
C2H2 Zn finger 324..344 CDD:275368 6/19 (32%)
C2H2 Zn finger 352..373 CDD:275368 7/20 (35%)
C2H2 Zn finger 381..401 CDD:275368 4/19 (21%)
C2H2 Zn finger 409..429 CDD:275368 4/19 (21%)
CTCFNP_648109.1 23ISL <116..206 CDD:293226 5/15 (33%)
C2H2 Zn finger 296..316 CDD:275368 6/21 (29%)
COG5048 321..>621 CDD:227381 62/240 (26%)
zf-C2H2 322..344 CDD:278523 7/24 (29%)
C2H2 Zn finger 324..344 CDD:275368 6/22 (27%)
zf-H2C2_2 337..361 CDD:290200 9/27 (33%)
C2H2 Zn finger 352..373 CDD:275368 7/20 (35%)
C2H2 Zn finger 381..401 CDD:275368 0/19 (0%)
zf-H2C2_2 394..415 CDD:290200 6/25 (24%)
C2H2 Zn finger 409..429 CDD:275368 8/21 (38%)
zf-H2C2_2 422..446 CDD:290200 9/23 (39%)
C2H2 Zn finger 437..457 CDD:275368 6/19 (32%)
C2H2 Zn finger 467..485 CDD:275368 6/17 (35%)
C2H2 Zn finger 496..516 CDD:275370 4/19 (21%)
C2H2 Zn finger 524..544 CDD:275368 4/19 (21%)
zf-H2C2_2 536..561 CDD:290200 3/9 (33%)
C2H2 Zn finger 552..573 CDD:275368
zf-C2H2 587..609 CDD:278523
C2H2 Zn finger 589..609 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24390
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.100

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