DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Best2 and best2

DIOPT Version :9

Sequence 1:NP_729159.2 Gene:Best2 / 38727 FlyBaseID:FBgn0035696 Length:809 Species:Drosophila melanogaster
Sequence 2:NP_988974.1 Gene:best2 / 394571 XenbaseID:XB-GENE-991642 Length:510 Species:Xenopus tropicalis


Alignment Length:509 Identity:206/509 - (40%)
Similarity:293/509 - (57%) Gaps:52/509 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MTVSYAGEVPNGSSFGCFWKILWKWRGSVYKLIWRELVAYLCLYYTINVIYRFGLTESQQAIFKK 65
            |||:|...|.| :.||.|:|:|..||||:|||:::|.:|:..:|..:::||||.|.|.|:..|.|
 Frog     1 MTVTYTARVAN-ARFGGFYKLLLLWRGSIYKLLYKEFLAFFLMYLALSIIYRFFLNEEQKLYFDK 64

  Fly    66 IRLYFGQQSESIPMSFVLGFYVNLVVKRWWEQYRLLPWPDTLALFISAAIPNSNGGVNNETGRLM 130
            :.:|....:..||:||||||||||||.|||.||..||:||.:...||..:..|     :|||||.
 Frog    65 VAIYCNNYANLIPVSFVLGFYVNLVVNRWWNQYLSLPFPDRVMCAISGTVHGS-----DETGRLY 124

  Fly   131 RRNIMRYMVLAYVITLQRISLRVKRRFPTTQHLVDAGLMHESEMKIFEALNQKSPMSKYWMPLVW 195
            ||.:|||..|:.::.|:.:|....:||||..|:|:||.|...|.|.||  |.:|..:|||:|.||
 Frog   125 RRTLMRYCSLSGLLILRSVSTAAFKRFPTIDHVVEAGFMTRLERKKFE--NLQSSYNKYWVPCVW 187

  Fly   196 ATNIINRARKDGLIASDHIVQTILVELSDIRRRLGGLIGYDTVCVPLVYTQVVTLVLYTYFIAAL 260
            ..|:.::||.:|.|..||..:.::.||:..|...|.|..||.:.||||||||||:.:|::|:..|
 Frog   188 FCNLASQARSEGRIRDDHSFKMLMEELNTFRGNCGMLFHYDWISVPLVYTQVVTIAVYSFFLTCL 252

  Fly   261 LGRQMLPNVLDRSGREDPDLFFPLFTVLQFVFYVGWLKVAEVLINPFGEDDDDIELNWLIDRHIK 325
            :|||.|.......|.| .||:.|:||:|||.||.|||||||.|||||||||||.|:|:||||:.:
 Frog   253 IGRQFLDPARGYPGHE-LDLYVPVFTLLQFFFYAGWLKVAEQLINPFGEDDDDFEINFLIDRNFQ 316

  Fly   326 AAYMIVDEMHEEHPELLRDQYWECVVPKDLPYTVASEHYRKDEP--KGSAEKYKVKKEDAMYANI 388
            .:.:.||||:.:.|.:.:|:||....|:. |||.|: .::|..|  :||.....:.|||..:   
 Frog   317 VSMLAVDEMYSDVPPMEKDRYWNHSDPRP-PYTAAT-LFQKHMPSFQGSTFNMAIPKEDMQF--- 376

  Fly   389 MPGGGKRMLSD--DVYADYESVDTPMVERRKNNWLVRQLSRMG-SMRSQSTAYSSG-GMPFNR-- 447
                  :.|||  ::..|..:...|:        |.|.|..:| |..|.|.|.:|. ..|.:|  
 Frog   377 ------QPLSDIEEMNEDTLTHPPPL--------LSRFLPGVGPSPLSSSAALASHFAAPGSRLT 427

  Fly   448 --NRLNSVYSS--------PESGLPLTILQQ----QQLQQAHQQQ--QAGSQPS 485
              .|..|.:||        |....|.:::..    ..:|:.|.::  ..|||.|
 Frog   428 LLRRSTSSFSSSSEFQCQEPVQDPPYSLVDSLGPGLNVQEGHTEELCNMGSQAS 481

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Best2NP_729159.2 Bestrophin 13..324 CDD:279411 152/310 (49%)
best2NP_988974.1 Bestrophin 8..316 CDD:395843 154/316 (49%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D145964at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10736
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X320
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
44.110

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