DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Best2 and Best3

DIOPT Version :9

Sequence 1:NP_729159.2 Gene:Best2 / 38727 FlyBaseID:FBgn0035696 Length:809 Species:Drosophila melanogaster
Sequence 2:NP_001007584.1 Gene:Best3 / 382427 MGIID:3580298 Length:669 Species:Mus musculus


Alignment Length:718 Identity:241/718 - (33%)
Similarity:360/718 - (50%) Gaps:126/718 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MTVSYAGEVPNGSSFGCFWKILWKWRGSVYKLIWRELVAYLCLYYTINVIYRFGLTESQQAIFKK 65
            |||:|:.:|.|.:.|| |.::|.|||||:|||::||.:.:..||..|:::||..||.:|:..|:|
Mouse     1 MTVTYSSKVANATFFG-FHRLLLKWRGSIYKLLYREFIVFAVLYTAISLVYRLLLTGAQKRYFEK 64

  Fly    66 IRLYFGQQSESIPMSFVLGFYVNLVVKRWWEQYRLLPWPDTLALFISAAIPNSNGGVNNETGRLM 130
            :.:|..:.:|.||::|||||||.|||.|||.|:..|||||.|.|.||:::..|     ::.|||:
Mouse    65 LSIYCDRYAEQIPVTFVLGFYVTLVVNRWWNQFVNLPWPDRLMLLISSSVHGS-----DQHGRLL 124

  Fly   131 RRNIMRYMVLAYVITLQRISLRVKRRFPTTQHLVDAGLMHESEMKIFEALNQKSPMSKYWMPLVW 195
            ||.:|||:.|..::..:.:|..|.:||||..|:|:||.|...|.|:|:.|  |||..|||:|.:|
Mouse   125 RRTLMRYVNLTSLLIFRSVSTAVYKRFPTMDHVVEAGFMTADERKLFDHL--KSPHLKYWVPFIW 187

  Fly   196 ATNIINRARKDGLIASDHIVQTILVELSDIRRRLGGLIGYDTVCVPLVYTQVVTLVLYTYFIAAL 260
            ..|:..:||.:|.|.....:|:::.|::..|.....|.|||.|.:||||||||||.:||:|.|.|
Mouse   188 FGNLATKARNEGRIRDSVDLQSLMTEMNRYRSWCSLLFGYDWVGIPLVYTQVVTLAVYTFFFACL 252

  Fly   261 LGRQMLPNVLDRSGREDPDLFFPLFTVLQFVFYVGWLKVAEVLINPFGEDDDDIELNWLIDRHIK 325
            :|||.|.......| .|.||:.|:||:|||.||.|||||||.|||||||||||.|.||.|||:::
Mouse   253 IGRQFLDPTKGYVG-HDLDLYVPIFTLLQFFFYAGWLKVAEQLINPFGEDDDDFETNWCIDRNLQ 316

  Fly   326 AAYMIVDEMHEEHPELLRDQYWECVVPKDLPYTVASEHYRKDEPKGSAEKYKVKKEDAMYANIMP 390
            .:.:.|||||...|::.:|.||:....:. |||:|:..|......||              .|..
Mouse   317 VSLLAVDEMHMSLPKMKKDIYWDDSAARP-PYTLAAADYCIPSFLGS--------------TIQM 366

  Fly   391 G-GGKRMLSDDVYADYES-VDTPMVERRKNNWL--------VRQLSRMGSMRSQSTAYSSGGMPF 445
            | .|....::|...:||. .:...|.||...:|        .|:....|...|.|:.:    :|.
Mouse   367 GLSGSNFPAEDWLWNYEKHGNRHSVMRRVKRFLSTHEHPGSPRRRRSFGRQASDSSMF----LPP 427

  Fly   446 N--RNRLNSVYSSPESGLPLTILQQQQLQQAHQQQQAGSQPSKSSLYGKFVHRKSLRAQRQLIKQ 508
            :  |:.|:....:|..|.|             .::|:.||.....|:.......::|.    ..:
Mouse   428 SPARDLLDVPSRNPHRGSP-------------TRKQSRSQEGSPKLHSSMGELSTIRE----TSR 475

  Fly   509 NSKLNGL----NVNVAKTR-PRIP--------TPEVAKDGNTNPATSSVLM----------APQQ 550
            .|.|..|    :|..:.|: |::|        .|..:.|.:.:.:|:|:|.          ..||
Mouse   476 TSTLQSLSPQSSVRSSPTKMPQVPEVLITAAEAPAFSADSHQHDSTTSILSLEFTGVQPSGTEQQ 540

  Fly   551 LSTTSAPPG-------------------------MYPSSYA-PDTLLHQESGQVLGTLLLSPIKE 589
            :..:..|||                         .:|..:: |:.|..:.:.  ||.|...|:..
Mouse   541 VEPSGTPPGDPNPQTTSASTERDLFKFEEDLEDDRFPKRWSLPEFLESRHTS--LGNLGPDPVSP 603

  Fly   590 MD--------SSSSNNTLIPGHPATAALAASMKEGFTPSSIPAATNITTLSFPFSVTSTGGETMP 646
            .|        :.|..|.:.||  |.:|||..:.  :...|:...|:|    ..|:...||  ..|
Mouse   604 RDALLLPDTETPSETNGIHPG--AGSALAPDIL--YLMESLDKETDI----LEFNNEHTG--ESP 658

  Fly   647 TGT 649
            .||
Mouse   659 KGT 661

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Best2NP_729159.2 Bestrophin 13..324 CDD:279411 152/310 (49%)
Best3NP_001007584.1 Bestrophin 8..315 CDD:279411 154/315 (49%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 399..496 21/117 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 533..560 5/26 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 591..627 10/39 (26%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 646..669 7/22 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3547
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D145964at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_101870
Panther 1 1.100 - - O PTHR10736
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X320
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
87.780

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