DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Best2 and best-16

DIOPT Version :9

Sequence 1:NP_729159.2 Gene:Best2 / 38727 FlyBaseID:FBgn0035696 Length:809 Species:Drosophila melanogaster
Sequence 2:NP_001023344.2 Gene:best-16 / 3565658 WormBaseID:WBGene00020046 Length:463 Species:Caenorhabditis elegans


Alignment Length:461 Identity:156/461 - (33%)
Similarity:242/461 - (52%) Gaps:53/461 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MTVSYAGEVPNGSSFGCFWKILWKWRGSVYKLIWRELVAYLCLYYTINVIYRFGLT-ESQQAI-F 63
            ||||||..| :.:.:..|.|:|.||:|||.|.:|.||:.::.||..|.:|.....: |::.|| .
 Worm     1 MTVSYALSV-SSARYSAFLKLLQKWKGSVLKAVWAELLVWIGLYTAIALIINLSFSPETKTAISI 64

  Fly    64 KKIRLYFGQQSESIPMSFVLGFYVNLVVKRWWEQYRLLPWPDTLALFISAAIPNSNGGVNNETGR 128
            :..||  ..|...:.:.|:|||:|.:||.||....:.:.:.:|:||.:|..|..|:..|     |
 Worm    65 EAARL--DDQLGILDIKFMLGFFVTIVVDRWKTILQNIGFIETVALSVSTIIRGSDDNV-----R 122

  Fly   129 LMRRNIMRYMVLAYVITLQRISLRVKRRFPTTQHLVDAGLMHESEMKIFEALNQKSPMSKYWMPL 193
            |.||:|:||:||:..:..:.||:||:|||||.:.|::||.:.|:|:...|  ..::..:|||:|:
 Worm   123 LARRSIIRYLVLSQAMVYRDISMRVRRRFPTMKSLMEAGFIFENELHELE--QTETGYNKYWVPI 185

  Fly   194 VWATNIINRARKDGLIASDHIVQTILVELSDIRRRLGGLIGYDTVCVPLVYTQVVTLVLYTYFIA 258
            .|..:|:.|.::...|.:......:|..:.|.|.:|..|..:|.|.:|:.|.|:|.|.:..:|..
 Worm   186 NWCNSIVWRMQEQKYIEAPVSTNNVLNNIRDFRTQLENLCKFDWVPIPISYPQIVFLAVRIHFFF 250

  Fly   259 ALLGRQMLPNVLDRSGREDPDLFF---PLFTVLQFVFYVGWLKVAEVLINPFGEDDDDIELNWLI 320
            .|..||.:|.      ..:..|::   ||.....|..|:||:||||.|:|||||||||.|.||:|
 Worm   251 TLFTRQYIPM------ETEEYLWYRHIPLIPATSFFLYLGWMKVAEALLNPFGEDDDDFEGNWVI 309

  Fly   321 DRHIKAAYMIVDEMHEEHPELLRDQYWECVVPKDLPY--TVASEHYRKDEP---KGSAEKYKVKK 380
            |::||....||||.|.|.|.|..||:.:   ||..|.  :|.:||     |   :|||....:..
 Worm   310 DKNIKTGMQIVDESHAECPILNIDQFSD---PKFGPMYPSVLAEH-----PHILQGSAADVVIPD 366

  Fly   381 EDAMYANIMPGGGKRMLSDDVYADYESVDTPMVERRKNNWLVRQLSRMGSM----RSQS-----T 436
            .|.          .:|:..|......|..:...::|:.:.:.|:..|:.:.    ||.|     |
 Worm   367 SDK----------SKMVHVDSKTSVASGASGSNDQRRESSIRRRFRRLSTRLKLGRSISHPKGQT 421

  Fly   437 AYSSGG 442
            ..|.||
 Worm   422 VKSPGG 427

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Best2NP_729159.2 Bestrophin 13..324 CDD:279411 113/315 (36%)
best-16NP_001023344.2 Bestrophin 9..313 CDD:279411 114/319 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3547
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D145964at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_101870
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.720

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