DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Best2 and C09B9.85

DIOPT Version :9

Sequence 1:NP_729159.2 Gene:Best2 / 38727 FlyBaseID:FBgn0035696 Length:809 Species:Drosophila melanogaster
Sequence 2:NP_001263751.1 Gene:C09B9.85 / 24104191 WormBaseID:WBGene00220250 Length:555 Species:Caenorhabditis elegans


Alignment Length:576 Identity:147/576 - (25%)
Similarity:237/576 - (41%) Gaps:144/576 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MTVSYAGEVPNGSSFGCFWKILWKWRGSVYKLIWRELVAYLCLYYTINVIYRFGLTESQQAIFKK 65
            ||:||..:|...|.|. |:|||::|:|||:|.||:||..::..||||..:| ..|.:.::.||.|
 Worm     1 MTMSYNCDVATDSYFN-FFKILFRWKGSVWKSIWKELALWIVTYYTIKAVY-MTLDDDRKIIFDK 63

  Fly    66 IRLYFGQQSESIPMSFVLGFYVNLVVKRWWEQYRLLPWPDTLALFISAAIPNSN----------- 119
            ..|......:...::|:|.|:|..:|.||.:.:..:.:.::.|..|:|.:.:.|           
 Worm    64 NFLPKIANFDLSVLTFMLTFFVTTIVARWNKIFDNMGFIESAAYAIAAFMDDKNDEPILKPAQEK 128

  Fly   120 ---------------------------GGVNNETG------------------------------ 127
                                       .|..|:|.                              
 Worm   129 KEIIKLEDRTDSVEKESDKNTKNKKKSSGEQNKTVKSGAENMKILKPDAVKYVEKQKELEKLNAA 193

  Fly   128 --------------------RLMRRNIMRYMVLAYVITLQRISLRVKRRFPTTQHLVDAGLMHES 172
                                |:.||.|:||:|.:.|:.|:.||:|..||||....:|.||.:|:.
 Worm   194 KKEEERMELEKLDAERKNKLRMARRTIIRYLVASQVLVLRTISMRTLRRFPNYTSIVAAGFLHQD 258

  Fly   173 EMKIFEALNQKSPMSKYWMPLVWATNI-------INRARKDGLIASDHIVQTILVELSDIRRRLG 230
            |..|.|  |......:.|:|:.|||.|       ::...||...|:..:......|:.:.:..:.
 Worm   259 EADIIE--NMDFEYDRTWVPIRWATEILREQFMAVSATNKDHPFAAPSLYSAAWQEIKNFQASIS 321

  Fly   231 GLIGYDTVCVPLVYTQVVTLVLYTYFIAALLGRQ-MLPNVLDRSGREDPDL------------FF 282
            .:...|.|.:||.|.||:...:..|||.....|| ||         .||::            :.
 Worm   322 VVKNADWVPIPLAYPQVIFFAVRLYFIFCTFTRQHML---------TDPEIDRTIDSSNYITYYI 377

  Fly   283 PLFTVLQFVFYVGWLKVAEVLINPFGEDDDDIELNWLIDRHIKAAYMIVDEMHEEHPELLRDQYW 347
            ||..:.||:..:||:||:|.|:||.||||||.|:|:||||:|.....|||..:.|.|.|.:..  
 Worm   378 PLGNIFQFICLMGWVKVSEALLNPLGEDDDDFEVNFLIDRNIYTGMAIVDTEYAECPALKKKN-- 440

  Fly   348 ECVVPKDLPYTVASEHYRKDEPKGSAEKYKVKKEDAMYANIMPGGGKRMLSDDVYADYESVDTPM 412
               :.|:.......||.|...|.|.         |....:.:.|..:.|..||. .:.:.....:
 Worm   441 ---LGKEKIDAFEGEHARPFYPHGM---------DGSIGDALVGSAQNMKFDDP-PEMKQFSVNI 492

  Fly   413 VERRKNNWLVRQLSRMGSMRSQSTAYSSGGMPFNRNRLNSVYSSPESG----LPLT 464
            ...:.....::..::.|:.|..|.|.:.....||    .|.||:.::|    :|::
 Worm   493 TPSKPRPTPLKPKNKEGAQRKISNASTFSTSTFN----ESGYSTNKAGALGPIPIS 544

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Best2NP_729159.2 Bestrophin 13..324 CDD:279411 113/418 (27%)
C09B9.85NP_001263751.1 Bestrophin 8..419 CDD:279411 114/423 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3547
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D145964at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

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